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BjornFJohansson

try to fix coverage for import statements

Aug 25, 2018

4c3f986 · Aug 25, 2018

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This branch is 921 commits behind pydna-group/pydna:master.

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Name		Name	Last commit message	Last commit date
parent directory ..
.ipynb_checkpoints		.ipynb_checkpoints	fix for biopython 1.72	Jun 29, 2018
.pytest_cache/v/cache		.pytest_cache/v/cache	prepare for 3.0	Jun 2, 2018
broken_genbank_files		broken_genbank_files	skip ci	Nov 25, 2016
subfolder		subfolder	prepare for 3.0	Jun 2, 2018
.coveragerc		.coveragerc	prepare for 3.0	Jun 2, 2018
02-G1_B01_013.ab1		02-G1_B01_013.ab1	changed so that caching is used under testing	Jun 6, 2015
28-1rev_D04_026.ab1		28-1rev_D04_026.ab1	changed so that caching is used under testing	Jun 6, 2015
32-3rev_H04_018.ab1		32-3rev_H04_018.ab1	changed so that caching is used under testing	Jun 6, 2015
36-5rev_D05_041.ab1		36-5rev_D05_041.ab1	changed so that caching is used under testing	Jun 6, 2015
AAA_OLD.gb		AAA_OLD.gb	prepare for 3.0	Jun 2, 2018
ABI01.abi		ABI01.abi	prepare for 3.0	Jun 2, 2018
AJ515744.gb		AJ515744.gb	updated conda-build to 2.1.0beta1	Dec 25, 2016
AJ515746.gb		AJ515746.gb	updated conda-build to 2.1.0beta1	Dec 25, 2016
AJ580803.gb		AJ580803.gb	updated conda-build to 2.1.0beta1	Dec 25, 2016
AJ580804.gb		AJ580804.gb	updated conda-build to 2.1.0beta1	Dec 25, 2016
AM086621.gb		AM086621.gb	updated conda-build to 2.1.0beta1	Dec 25, 2016
AX023560.gb		AX023560.gb	changed so that caching is used under testing	Jun 6, 2015
E05006.gb		E05006.gb	fix tests, remove cookbook	Nov 10, 2016
G.txt		G.txt	prepare for 3.0	Jun 2, 2018
GIN11M86.gb		GIN11M86.gb	changed so that caching is used under testing	Jun 6, 2015
GUP1_locus.gb		GUP1_locus.gb	added missing test files	Nov 8, 2016
GUP1rec1sens.txt		GUP1rec1sens.txt	added missing test files	Nov 8, 2016
GUP1rec2AS.txt		GUP1rec2AS.txt	added missing test files	Nov 8, 2016
Ggatcc (copy).gb		Ggatcc (copy).gb	prepare for 3.0	Jun 2, 2018
Ggatcc.gb		Ggatcc.gb	prepare for 3.0	Jun 2, 2018
KlLEU2tt.fas		KlLEU2tt.fas	changed so that caching is used under testing	Jun 6, 2015
KlLEU2tt.gb		KlLEU2tt.gb	changed so that caching is used under testing	Jun 6, 2015
New_DNA.gb		New_DNA.gb	prepare for 3.0	Jun 2, 2018
New_DNA__________________.gb		New_DNA__________________.gb	prepare for 3.0	Jun 2, 2018
RefDataBjorn.fas		RefDataBjorn.fas	changed so that caching is used under testing	Jun 6, 2015
SYNPUC19CV.gb		SYNPUC19CV.gb	changed so that caching is used under testing	Jun 6, 2015
X60065-100-110.gb		X60065-100-110.gb	prepare for 3.0	Jun 2, 2018
X60065.gb		X60065.gb	prepare for 3.0	Jun 2, 2018
XKS1_orf.txt		XKS1_orf.txt	added missing test files	Nov 8, 2016
YEp24PGK.txt		YEp24PGK.txt	added missing test files	Nov 8, 2016
YEp24PGK_.txt		YEp24PGK_.txt	added missing test files	Nov 8, 2016
YEp24PGK_XK_manually_assembled.txt		YEp24PGK_XK_manually_assembled.txt	added missing test files	Nov 8, 2016
_.gb		_.gb	prepare for 3.0	Jun 2, 2018
__getenv.txt		__getenv.txt	fix tests of env variables	Jun 29, 2018
foo		foo	prepare for 3.0	Jun 2, 2018
format_sequences.ipynb		format_sequences.ipynb	fix for biopython 1.72	Jun 29, 2018
jupyter_test_repr.ipynb		jupyter_test_repr.ipynb	prepare for 3.0	Jun 2, 2018
lambda.gb		lambda.gb	changed so that caching is used under testing	Jun 6, 2015
my_test_enzymes.txt		my_test_enzymes.txt	prepare for 3.0	Jun 2, 2018
mymodule.py		mymodule.py	2to3 all .py files. versioneer.py threw an error	Jul 3, 2016
myseq.gb		myseq.gb	prepare for 3.0	Jun 2, 2018
nucleotide1.xml		nucleotide1.xml	prepare for 3.0	Jun 2, 2018
output.file		output.file	prepare for 3.0	Jun 2, 2018
pAG25.gb		pAG25.gb	changed so that caching is used under testing	Jun 6, 2015
pAG32.gb		pAG32.gb	changed so that caching is used under testing	Jun 6, 2015
pCAPs-AjiI.gb		pCAPs-AjiI.gb	changed so that caching is used under testing	Jun 6, 2015
pCAPs-pSU0.gb		pCAPs-pSU0.gb	changed so that caching is used under testing	Jun 6, 2015
pCAPs.gb		pCAPs.gb	changed so that caching is used under testing	Jun 6, 2015
pCAPs_fasta (copy).txt		pCAPs_fasta (copy).txt	changed so that caching is used under testing	Jun 6, 2015
pCAPs_fasta.txt		pCAPs_fasta.txt	changed so that caching is used under testing	Jun 6, 2015
pCAPs_lowgc.gb		pCAPs_lowgc.gb	changed so that caching is used under testing	Jun 6, 2015
pCR_MCT1_HA46.gb		pCR_MCT1_HA46.gb	changed so that caching is used under testing	Jun 6, 2015
pGREG505.gb		pGREG505.gb	changed so that caching is used under testing	Jun 6, 2015
pGSHU 7180bp.gb		pGSHU 7180bp.gb	changed so that caching is used under testing	Jun 6, 2015
pGSKU 6961bp.gb		pGSKU 6961bp.gb	changed so that caching is used under testing	Jun 6, 2015
pGUP1_correct.gb		pGUP1_correct.gb	changed so that caching is used under testing	Jun 6, 2015
pGUP1_not_synced.gb		pGUP1_not_synced.gb	changed so that caching is used under testing	Jun 6, 2015
pMX4blaster2_old.gb		pMX4blaster2_old.gb	changed so that caching is used under testing	Jun 6, 2015
pUC19-BamHI-a-rc.gb		pUC19-BamHI-a-rc.gb	changed so that caching is used under testing	Jun 6, 2015
pUC19-BamHI-a.gb		pUC19-BamHI-a.gb	changed so that caching is used under testing	Jun 6, 2015
pUC19-EcoRI_PstI-d-rc.gb		pUC19-EcoRI_PstI-d-rc.gb	changed so that caching is used under testing	Jun 6, 2015
pUC19-SmaI-a.gb		pUC19-SmaI-a.gb	changed so that caching is used under testing	Jun 6, 2015
pUC19.gb		pUC19.gb	changed so that caching is used under testing	Jun 6, 2015
pUC19_MarkBudde.gb		pUC19_MarkBudde.gb	prepare for 3.0	Jun 2, 2018
pUC19_fasta.txt		pUC19_fasta.txt	changed so that caching is used under testing	Jun 6, 2015
pUC19_small_gene.gb		pUC19_small_gene.gb	changed so that caching is used under testing	Jun 6, 2015
pUC_LAC4.gb		pUC_LAC4.gb	changed so that caching is used under testing	Jun 6, 2015
pUC_LAC4_correct_rotation.gb		pUC_LAC4_correct_rotation.gb	changed so that caching is used under testing	Jun 6, 2015
pYPKa.gb		pYPKa.gb	prepare for 3.0	Jun 2, 2018
primer1.txt		primer1.txt	added missing test files	Nov 8, 2016
primer3.txt		primer3.txt	added missing test files	Nov 8, 2016
primers.fas		primers.fas	changed so that caching is used under testing	Jun 6, 2015
primers_linux_line_endings.txt		primers_linux_line_endings.txt	prepare for 3.0	Jun 2, 2018
profile.pstat		profile.pstat	prepare for 3.0	Jun 2, 2018
pth1.txt		pth1.txt	changed so that caching is used under testing	Jun 6, 2015
pth2.txt		pth2.txt	changed so that caching is used under testing	Jun 6, 2015
pthx.txt		pthx.txt	changed so that caching is used under testing	Jun 6, 2015
pydna_read_test.txt		pydna_read_test.txt	changed so that caching is used under testing	Jun 6, 2015
pydna_read_test2.txt		pydna_read_test2.txt	changed so that caching is used under testing	Jun 6, 2015
pydna_read_test3.txt		pydna_read_test3.txt	changed so that caching is used under testing	Jun 6, 2015
read1.gb		read1.gb	changed so that caching is used under testing	Jun 6, 2015
read2.gb		read2.gb	changed so that caching is used under testing	Jun 6, 2015
read3.fasta		read3.fasta	changed so that caching is used under testing	Jun 6, 2015
read4.fasta		read4.fasta	changed so that caching is used under testing	Jun 6, 2015
run_pytest_with_coverage.sh		run_pytest_with_coverage.sh	prepare for 3.0	Jun 2, 2018
save_changed_seq.ipynb		save_changed_seq.ipynb	prepare for 3.0	Jun 2, 2018
sequence.gb		sequence.gb	added lots of new _repr_xyz methods	Dec 4, 2016
test		test	fix unicode	Nov 15, 2016
test_extra_cut_features.py		test_extra_cut_features.py	prepare for 3.0	Jun 2, 2018
test_extra_markbudde.py		test_extra_markbudde.py	prepare for 3.0	Jun 2, 2018
test_extra_santirdnd_bug_spanning_features.py		test_extra_santirdnd_bug_spanning_features.py	prepare for 3.0	Jun 2, 2018
test_module___init__.py		test_module___init__.py	fix tests	Jun 29, 2018
test_module__pretty.py		test_module__pretty.py	prepare for 3.0	Jun 2, 2018
test_module__sequencetrace.py		test_module__sequencetrace.py	prepare for 3.0	Jun 2, 2018
test_module__thermodynamic_data.py		test_module__thermodynamic_data.py	prepare for 3.0	Jun 2, 2018
test_module_all.py		test_module_all.py	prepare for 3.0	Jun 2, 2018
test_module_amplicon.py		test_module_amplicon.py	prepare for 3.0	Jun 2, 2018
test_module_amplify.py		test_module_amplify.py	prepare for 3.0	Jun 2, 2018
test_module_assembly.py		test_module_assembly.py	fixed tests for 3.5	Jun 29, 2018
test_module_common_sub_strings.py		test_module_common_sub_strings.py	prepare for 3.0	Jun 2, 2018
test_module_contig.py		test_module_contig.py	prepare for 3.0	Jun 2, 2018
test_module_design.py		test_module_design.py	prepare for 3.0	Jun 2, 2018
test_module_download.py		test_module_download.py	try to fix coverage for import statements	Aug 25, 2018
test_module_dseq.py		test_module_dseq.py	prepare for 3.0	Jun 2, 2018
test_module_dseqrecord.py		test_module_dseqrecord.py	try to fix coverage for import statements	Aug 25, 2018
test_module_editor.py		test_module_editor.py	try to fix coverage for import statements	Aug 25, 2018
test_module_genbank.py		test_module_genbank.py	fixed some docstring	Jul 4, 2018
test_module_genbankfile.py		test_module_genbankfile.py	prepare for 3.0	Jun 2, 2018
test_module_genbankfixer.py		test_module_genbankfixer.py	try to fix coverage for import statements	Aug 25, 2018
test_module_genbankrecord.py		test_module_genbankrecord.py	prepare for 3.0	Jun 2, 2018
test_module_myenzymes.py		test_module_myenzymes.py	fix tests	Jun 29, 2018
test_module_myprimers.py		test_module_myprimers.py	fixed some docstring	Jul 4, 2018
test_module_parsers.py		test_module_parsers.py	prepare for 3.0	Jun 2, 2018
test_module_primer.py		test_module_primer.py	prepare for 3.0	Jun 2, 2018
test_module_readers.py		test_module_readers.py	added one test for reading with feature crossing origin	Aug 23, 2018
test_module_seqrecord.py		test_module_seqrecord.py	fixed tests since add_feature now specifies the strand	Aug 23, 2018
test_module_tm.py		test_module_tm.py	prepare for 3.0	Jun 2, 2018
test_module_utils.py		test_module_utils.py	prepare for 3.0	Jun 2, 2018
untitled1.py		untitled1.py	prepare for 3.0	Jun 2, 2018
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