* Added ambiguous_for_taxon annotation property - applied to serial …

…digits for aves * Neuro * Adding Cumbo defs and subsets. Addresses issue #320 * NTs for prosomere and mesomere, not clear if these will remain. See issue #318 * Added multiple NN xrefs * tagged homology with subsets * removed homology logical assertions for procoracoid and scapular spine based on review by Phenoscape AD/PM. Addresses issue #319 * merged future {corpus striatum, caudate nucleus} into the generic structure * NT: {left,right} crus of diaphragm * relabeled median umbilical ligament -> remnant of urachus * NTs for palpebral vein/arteries * Made groove a feature of a tissue (anatomical structure). Created separate class for groove qua line (not clear if this is useful). Addressses #314 * classified digestive tube junctions as anatomical junctions (material) rather than boundaries (immaterial). Fixes issue #314
obophenotype · Aug 10, 2013 · 6a73f6d · 6a73f6d
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diff --git a/Makefile b/Makefile
@@ -21,12 +21,17 @@ uberon_edit.owl: uberon_edit.obo
 ### TODO - restore --expand-macros
 ###	owltools $(UCAT) $< --merge-support-ontologies --expand-macros -o -f functional $@
 
+pe:
+	mkdir pe
+
+# note: developers may want to do this via a symlink
+pe/phenoscape-ext.owl: pe
+	wget http://purl.obolibrary.org/obo/uberon/phenoscape-ext.owl -O $@
+
 # this is primarily used for seeding
 phenoscape-ext-noimports.owl: pe/phenoscape-ext.owl
 	owltools $(UCAT) $< --remove-imports-declarations -o -f functional $@
 
-#t:
-#	echo $(RELEASE)
 
 corecheck.owl: uberon_edit.obo 
 	owltools $(UCAT) $< external-disjoints.owl --merge-support-ontologies --expand-macros --assert-inferred-subclass-axioms --useIsInferred -o -f functional $@
@@ -224,7 +229,7 @@ bridge-check-%.txt: uberon_edit.obo bridge/bridges external-disjoints.owl
 
 # TODO: add to Oort
 %-xp-check: %.obo
-	obo-check-xps.pl $< >& $@ || (echo "problems" && exit 1)
+	obo-check-xps.pl $< > $@ 2> $@.err || (echo "problems" && exit 1)
 
 
 # See: http://douroucouli.wordpress.com/2012/07/03/45/
@@ -274,7 +279,7 @@ QC_FILES = uberon_edit-xp-check\
 
 
 uberon-qc: $(QC_FILES) all_systems
-	cat merged-orphans uberon_edit-obscheck.txt uberon_edit-cycles uberon_edit-xp-check uberon-cycles uberon-orphans uberon-synclash uberon-dv.txt uberon-discv.txt uberon-simple-allcycles uberon-simple-orphans merged-cycles composite-metazoan-dv.txt 
+	cat merged-orphans uberon_edit-obscheck.txt uberon_edit-cycles uberon_edit-xp-check.err uberon-cycles uberon-orphans uberon-synclash uberon-dv.txt uberon-discv.txt uberon-simple-allcycles uberon-simple-orphans merged-cycles composite-metazoan-dv.txt 
 
 
 

diff --git a/basic.obo b/basic.obo
diff --git a/bridge/cl-bridge-to-aao.obo b/bridge/cl-bridge-to-aao.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-aao
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to aao" xsd:string
 property_value: dc-description "Equivalence axioms between AAO and CL. Note that AAO is in the process of being merged into the core CL, so this mapping will become deprecated" xsd:string

diff --git a/bridge/cl-bridge-to-aao.owl b/bridge/cl-bridge-to-aao.owl
@@ -21,7 +21,7 @@
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/aao.owl"/>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao/2013-07-23/uberon/bridge/cl-bridge-to-aao.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao/2013-08-09/uberon/bridge/cl-bridge-to-aao.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-bila.obo b/bridge/cl-bridge-to-bila.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-bila
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Typedef]

diff --git a/bridge/cl-bridge-to-bila.owl b/bridge/cl-bridge-to-bila.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila/2013-07-23/uberon/bridge/cl-bridge-to-bila.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila/2013-08-09/uberon/bridge/cl-bridge-to-bila.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-bspo.obo b/bridge/cl-bridge-to-bspo.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-bspo
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Typedef]

diff --git a/bridge/cl-bridge-to-bspo.owl b/bridge/cl-bridge-to-bspo.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo/2013-07-23/uberon/bridge/cl-bridge-to-bspo.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo/2013-08-09/uberon/bridge/cl-bridge-to-bspo.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-caro.obo b/bridge/cl-bridge-to-caro.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-caro
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/bridge/cl-bridge-to-caro.owl b/bridge/cl-bridge-to-caro.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro/2013-07-23/uberon/bridge/cl-bridge-to-caro.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro/2013-08-09/uberon/bridge/cl-bridge-to-caro.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-ehdaa.obo b/bridge/cl-bridge-to-ehdaa.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-ehdaa
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Typedef]

diff --git a/bridge/cl-bridge-to-ehdaa.owl b/bridge/cl-bridge-to-ehdaa.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa/2013-07-23/uberon/bridge/cl-bridge-to-ehdaa.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa/2013-08-09/uberon/bridge/cl-bridge-to-ehdaa.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-ehdaa2.obo b/bridge/cl-bridge-to-ehdaa2.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-ehdaa2
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to ehdaa2" xsd:string
 property_value: dc-description "Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA" xsd:string

diff --git a/bridge/cl-bridge-to-ehdaa2.owl b/bridge/cl-bridge-to-ehdaa2.owl
@@ -19,7 +19,7 @@
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/ehdaa2.owl"/>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2/2013-07-23/uberon/bridge/cl-bridge-to-ehdaa2.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2/2013-08-09/uberon/bridge/cl-bridge-to-ehdaa2.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-emapa.obo b/bridge/cl-bridge-to-emapa.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-emapa
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to emapa" xsd:string
 property_value: dc-description "Taxonomic equivalence axioms between EMAPA (abstract developmental mouse) and CL" xsd:string

diff --git a/bridge/cl-bridge-to-emapa.owl b/bridge/cl-bridge-to-emapa.owl
@@ -21,7 +21,7 @@
         <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">vHOG editors</dc:creator>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/fma.owl"/>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa/2013-07-23/uberon/bridge/cl-bridge-to-emapa.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa/2013-08-09/uberon/bridge/cl-bridge-to-emapa.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-fbbt.obo b/bridge/cl-bridge-to-fbbt.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-fbbt
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to fbbt" xsd:string
 property_value: dc-description "Taxonomic equivalence axioms between the drosophila anatomy ontology and CL. Note that currently CL focuses on chordate anatomy so there are only a minimal set of equivalencies for high level classes. In future CL may bridge via the arthropod anatomy ontology" xsd:string

diff --git a/bridge/cl-bridge-to-fbbt.owl b/bridge/cl-bridge-to-fbbt.owl
@@ -19,7 +19,7 @@
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/fbbt.owl"/>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt/2013-07-23/uberon/bridge/cl-bridge-to-fbbt.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt/2013-08-09/uberon/bridge/cl-bridge-to-fbbt.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-fma.obo b/bridge/cl-bridge-to-fma.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-fma
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to fma" xsd:string
 property_value: dc-description "Taxonomic equivalence axioms between the FMA and CL" xsd:string

diff --git a/bridge/cl-bridge-to-fma.owl b/bridge/cl-bridge-to-fma.owl
@@ -20,7 +20,7 @@
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/fma.owl"/>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fma/2013-07-23/uberon/bridge/cl-bridge-to-fma.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fma/2013-08-09/uberon/bridge/cl-bridge-to-fma.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-go.obo b/bridge/cl-bridge-to-go.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-go
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/bridge/cl-bridge-to-go.owl b/bridge/cl-bridge-to-go.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-go.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-go/2013-07-23/uberon/bridge/cl-bridge-to-go.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-go/2013-08-09/uberon/bridge/cl-bridge-to-go.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-hao.obo b/bridge/cl-bridge-to-hao.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-hao
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/bridge/cl-bridge-to-hao.owl b/bridge/cl-bridge-to-hao.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-hao.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-hao/2013-07-23/uberon/bridge/cl-bridge-to-hao.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-hao/2013-08-09/uberon/bridge/cl-bridge-to-hao.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-ma.obo b/bridge/cl-bridge-to-ma.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-ma
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to ma" xsd:string
 property_value: dc-description "Taxonomic equivalence axioms between adult moouse anatomy and CL" xsd:string

diff --git a/bridge/cl-bridge-to-ma.owl b/bridge/cl-bridge-to-ma.owl
@@ -20,7 +20,7 @@
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/ma.owl"/>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ma/2013-07-23/uberon/bridge/cl-bridge-to-ma.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ma/2013-08-09/uberon/bridge/cl-bridge-to-ma.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-mfo.obo b/bridge/cl-bridge-to-mfo.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-mfo
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/bridge/cl-bridge-to-mfo.owl b/bridge/cl-bridge-to-mfo.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-mfo.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-mfo/2013-07-23/uberon/bridge/cl-bridge-to-mfo.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-mfo/2013-08-09/uberon/bridge/cl-bridge-to-mfo.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-ncithesaurus.obo b/bridge/cl-bridge-to-ncithesaurus.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-ncithesaurus
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/bridge/cl-bridge-to-ncithesaurus.owl b/bridge/cl-bridge-to-ncithesaurus.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ncithesaurus.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ncithesaurus/2013-07-23/uberon/bridge/cl-bridge-to-ncithesaurus.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ncithesaurus/2013-08-09/uberon/bridge/cl-bridge-to-ncithesaurus.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-nif_grossanatomy.obo b/bridge/cl-bridge-to-nif_grossanatomy.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-nif_grossanatomy
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Typedef]

diff --git a/bridge/cl-bridge-to-nif_grossanatomy.owl b/bridge/cl-bridge-to-nif_grossanatomy.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-nif_grossanatomy.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-nif_grossanatomy/2013-07-23/uberon/bridge/cl-bridge-to-nif_grossanatomy.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-nif_grossanatomy/2013-08-09/uberon/bridge/cl-bridge-to-nif_grossanatomy.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-og.obo b/bridge/cl-bridge-to-og.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-og
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Typedef]

diff --git a/bridge/cl-bridge-to-og.owl b/bridge/cl-bridge-to-og.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-og.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-og/2013-07-23/uberon/bridge/cl-bridge-to-og.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-og/2013-08-09/uberon/bridge/cl-bridge-to-og.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-spd.obo b/bridge/cl-bridge-to-spd.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-spd
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/bridge/cl-bridge-to-spd.owl b/bridge/cl-bridge-to-spd.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-spd.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-spd/2013-07-23/uberon/bridge/cl-bridge-to-spd.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-spd/2013-08-09/uberon/bridge/cl-bridge-to-spd.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-tads.obo b/bridge/cl-bridge-to-tads.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-tads
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/bridge/cl-bridge-to-tads.owl b/bridge/cl-bridge-to-tads.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tads.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tads/2013-07-23/uberon/bridge/cl-bridge-to-tads.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tads/2013-08-09/uberon/bridge/cl-bridge-to-tads.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-tao.obo b/bridge/cl-bridge-to-tao.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-tao
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to tao" xsd:string
 property_value: dc-description "Taxonomic equivalence axioms between TAO and CL. Note that TAO is in the process of being merged into the core CL, so this mapping will become deprecated" xsd:string

diff --git a/bridge/cl-bridge-to-tao.owl b/bridge/cl-bridge-to-tao.owl
@@ -20,7 +20,7 @@
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/tao.owl"/>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tao/2013-07-23/uberon/bridge/cl-bridge-to-tao.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tao/2013-08-09/uberon/bridge/cl-bridge-to-tao.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-tgma.obo b/bridge/cl-bridge-to-tgma.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-tgma
-data-version: 2013-07-23
+data-version: 2013-08-09
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]