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Added ambiguous_for_taxon. Fixed synclash for spinal cord neuromere
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cmungall committed Aug 10, 2013
1 parent b5bf714 commit 39b5e9e
Showing 1 changed file with 9 additions and 4 deletions.
13 changes: 9 additions & 4 deletions uberon_edit.obo
Original file line number Diff line number Diff line change
Expand Up @@ -3982,7 +3982,8 @@ intersection_of: part_of UBERON:0009616 ! presumptive midbrain
id: UBERON:0014777
name: spinal neuromere
def: "A neuromere that is part of the presumptive spinal cord" []
synonym: "spinal cord segment" EXACT [TAO:0001332]
synonym: "spinal cord metameric segment" EXACT []
synonym: "spinal cord segment" RELATED [TAO:0001332]
synonym: "spinal neuromeres" EXACT PLURAL [TAO:0001332]
intersection_of: UBERON:0004731 ! neuromere
intersection_of: part_of UBERON:0006241 ! future spinal cord
Expand Down Expand Up @@ -103145,6 +103146,7 @@ is_a: UBERON:0002389 ! manual digit
intersection_of: UBERON:0006048
intersection_of: part_of UBERON:0002398 ! manus
relationship: preaxialmost_part_of UBERON:0002398 ! manus
relationship: ambiguous_for_taxon NCBITaxon:8782 ! Aves
xref: SCTID:302540006 ! Entire thumb
xref: SCTID:69603001 ! Dewclaw of forelimb
xref: EHDAA2:0000511 ! finger 1
Expand Down Expand Up @@ -103199,6 +103201,7 @@ xref: AAO:0010640 ! fore digit II
is_a: UBERON:0002389 ! manual digit
intersection_of: UBERON:0006049
intersection_of: part_of UBERON:0002398 ! manus
relationship: ambiguous_for_taxon NCBITaxon:8782 ! Aves
xref: http://upload.wikimedia.org/wikipedia/commons/d/d5/Index_finger.JPG
xref: SCTID:362758006 ! Entire index finger
property_value: taxon_notes "This class represents the standard tetrapod configuration. Wagner proposes that avian digits I,II,III develop from C2,C3,C4. To support this scheme we have separate classes representing the avian digits (here called alula, manual digit, major digit)." xsd:string {scope="NCBITaxon:8782", source="PhenoscapeRCN", source="PMID:10220427", seeAlso="UBERON:0012261"}
Expand Down Expand Up @@ -103246,6 +103249,7 @@ xref: AAO:0010641 ! fore digit III
is_a: UBERON:0002389 ! manual digit
intersection_of: UBERON:0006050
intersection_of: part_of UBERON:0002398 ! manus
relationship: ambiguous_for_taxon NCBITaxon:8782 ! Aves
synonym: "digitus medius" RELATED LATIN [Wikipedia:Middle_finger]
xref: http://upload.wikimedia.org/wikipedia/commons/f/fd/Middle_finger.jpg
xref: SCTID:362763005 ! Entire middle finger
Expand Down Expand Up @@ -103296,6 +103300,7 @@ xref: EMAPA:17438 ! digit 4 of fore-paw
is_a: UBERON:0002389 ! manual digit
intersection_of: UBERON:0006051
intersection_of: part_of UBERON:0002398 ! manus
relationship: ambiguous_for_taxon NCBITaxon:8782 ! Aves
synonym: "digitus annularis" RELATED LATIN [Wikipedia:Ring_finger]
xref: http://upload.wikimedia.org/wikipedia/commons/1/14/Ring_finger.JPG
xref: SCTID:362768001 ! Entire ring finger
Expand Down Expand Up @@ -153829,9 +153834,9 @@ is_metadata_tag: true
is_class_level: true

[Typedef]
id: not_recommended_for_taxon
name: not_recommended_for_taxon
def: "S not_recommended_for_taxon T if the class S does not have a clear referent in taxon T. An example would be the class 'manual digit 1', which encompasses a homology hypotheses that is accepted for some species (e.g. human and mouse), but does not have a clear referent in Aves - the referent is dependent on the hypothesis embraced, and also on the ontogenetic stage." [PHENOSCPAE:asilomar_mtg]
id: ambiguous_for_taxon
name: ambiguous_for_taxon
def: "S ambiguous_for_taxon T if the class S does not have a clear referent in taxon T. An example would be the class 'manual digit 1', which encompasses a homology hypotheses that is accepted for some species (e.g. human and mouse), but does not have a clear referent in Aves - the referent is dependent on the hypothesis embraced, and also on the ontogenetic stage." [PHENOSCPAE:asilomar_mtg]
is_metadata_tag: true
is_class_level: true

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