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@murphygroup

Murphy Lab

Carnegie Mellon University

Popular repositories Loading

  1. CellSegmentationEvaluator CellSegmentationEvaluator Public

    Evaluating the quality of a cell segmentation method without reference.

    Python 7 3

  2. docker-matlabmcr2018b-jupyter docker-matlabmcr2018b-jupyter Public

    🐳 Matlab MCR 2018b + Jupyter Notebook

    Dockerfile 3

  3. 3DCellComposer 3DCellComposer Public

    3DCellComposer - A Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation

    Python 3 1

  4. docker-cellorganizer docker-cellorganizer Public

    CellOrganizer for Docker

    Dockerfile 2 1

  5. cellorganizer cellorganizer Public

    Repository for CellOrganizer v2.6 and above.

    MATLAB 2 3

  6. cellorganizer_old cellorganizer_old Public

    CellOrganizer public repository

    MATLAB 1 1

Repositories

Showing 10 of 44 repositories
  • 3DCellComposer Public

    3DCellComposer - A Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation

    Python 3 GPL-3.0 1 2 0 Updated Feb 25, 2025
  • SPRM Public
    Python 0 GPL-3.0 0 6 0 Updated Jan 9, 2025
  • ChenMurphy3DCellComposerRRA Public

    This is the reproducible research archive that reproduces all results and figures in the manuscript "3DCellComposer - A Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation"

    Python 0 MIT 0 0 0 Updated Aug 8, 2024
  • SPRM-RRA Public

    Reproducable Research Archive for SPRM manuscript

    Python 0 0 0 0 Updated Jul 31, 2024
  • CODEXPanelOptimization Public
    Jupyter Notebook 1 0 0 0 Updated Jun 25, 2024
  • CellSegmentationEvaluator Public

    Evaluating the quality of a cell segmentation method without reference.

    Python 7 MIT 3 5 1 Updated Feb 8, 2024
  • phenocycler-pipeline Public Forked from hubmapconsortium/mibi-pipeline

    Forked from celldive/mibi to create new pipeline for phenocycler

    Python 0 GPL-3.0 4 0 0 Updated Feb 2, 2024
  • ChenMurphyCytoSpatioRRA Public

    This is the reproducible research archive that reproduces all results and figures in the manuscript "CytoSpatio: Learning cell type spatial relationships using multirange, multitype point process models".

    R 0 GPL-3.0 0 0 0 Updated Sep 7, 2023
  • CytoSpatio Public

    CytoSpatio: Learning Cell Type Spatial Relationships

    R 0 GPL-3.0 0 0 0 Updated Aug 23, 2023
  • cellorganizer Public

    Repository for CellOrganizer v2.6 and above.

    MATLAB 2 GPL-3.0 3 7 (1 issue needs help) 0 Updated Jul 26, 2023
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