Code

Feature diversity measures#117

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kpj merged 12 commits intomastercbg-ethz/V-pipe:masterfrom feature-diversity_measurescbg-ethz/V-pipe:feature-diversity_measuresCopy head branch name to clipboardDec 18, 2021

+382-4

Commits

Commits on Oct 20, 2021

• script computing several diversity measures based on snvs.vcf

  

  Lara Fuhrmann

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  eaa43b4

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Commits on Dec 14, 2021

• Merge branch 'master' into feature-diversity_measures

  

  Lara Fuhrmann

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Commits on Dec 17, 2021

• updated diversity computation and integration into the workflow

  

  Lara Fuhrmann

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  10db97d

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• specifying versions

  

  Lara Fuhrmann

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• code formatting according to snakefmt

  

  Lara Fuhrmann

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• uncommenting line

  

  Lara Fuhrmann

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• reformatted with black

  

  Lara Fuhrmann

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• added version for pyvcf

  

  Lara Fuhrmann

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• exclude per sample diversity files as we have the aggregated one later

  

  Lara Fuhrmann

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• reformatted with black

  

  Lara Fuhrmann

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Commits on Dec 18, 2021

• Add diversity option to exemplary config

  kpj

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  4a6bc70

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• Test diversity computation in GA workflow and Dockerfile

  kpj

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