Add clean up step

zavolanlab · Oct 22, 2024 · f5b780e · f5b780e
1 parent caae76f
commit f5b780e
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -242,4 +242,7 @@ jobs:
           run: mamba env update -p $CONDA_PREFIX -f install/environment.dev.yml
 
         - name: Run test script
-          run: bash tests/test_integration_workflow_with_docker/test.local.sh
+          run: bash tests/test_integration_workflow_with_docker/test.local.sh
+
+        - name: Clean up
+          run: rm -rf data
diff --git a/tests/test_integration_workflow_with_docker/test.local.sh b/tests/test_integration_workflow_with_docker/test.local.sh
@@ -8,7 +8,6 @@ cleanup () {
     rm -rf .fontconfig/
     rm -rf .java/
     rm -rf .snakemake/
-    rm -rf data/
     cd $user_dir
     echo "Exit status: $rc"
 }
@@ -43,6 +42,4 @@ docker run \
     -p \
     --snakefile /workflow/Snakefile \
     --configfile data/config_docker.yaml \
-    --cores 4 --use-conda --verbose
-
-ls -ltr data
+    --cores 4 --use-conda --verbose