Website update #164
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name: "Website update" | |
on: | |
push: | |
branches: | |
- "**" | |
- "!gh-pages" | |
pull_request: | |
branches: | |
- main | |
schedule: | |
- cron: "0 3 * * MON" | |
workflow_dispatch: | |
inputs: | |
branch: | |
description: "Branch on viskex repository" | |
type: string | |
reset_github_pages: | |
description: "Reset the gh-pages branch (yes or no; default: no). Remember to set the gh-pages branch back in Settings -> Pages!" | |
type: string | |
jobs: | |
convert_notebooks: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
include: | |
- backend: dolfinx | |
container: ghcr.io/fenics/dolfinx/dolfinx:nightly | |
setup_container: | | |
export DEBIAN_FRONTEND="noninteractive" | |
apt update -y -q | |
apt install -y -qq xvfb | |
notebook_pattern: | | |
"**/tutorial_*_dolfinx.ipynb" | |
- backend: firedrake | |
container: firedrakeproject/firedrake | |
setup_container: | | |
export DEBIAN_FRONTEND="noninteractive" | |
apt update -y -q | |
apt install -y -qq xvfb | |
echo "/home/firedrake/firedrake/bin" >> $GITHUB_PATH | |
notebook_pattern: | | |
"**/tutorial_*_firedrake*.ipynb" | |
fail-fast: false | |
container: | |
image: ${{ matrix.container }} | |
options: --user root | |
steps: | |
- name: Determine which branch to checkout when cloning source repository | |
id: source_branch | |
run: | | |
if [ -n "${{ (inputs || github.event.inputs).branch }}" ]; then | |
echo "branch=${{ (inputs || github.event.inputs).branch }}" >> ${GITHUB_OUTPUT} | |
else | |
echo "branch=main" >> ${GITHUB_OUTPUT} | |
fi | |
shell: bash | |
- name: Clone source repository on the previously computed branch | |
uses: actions/checkout@v4 | |
with: | |
repository: viskex/viskex | |
ref: ${{ steps.source_branch.outputs.branch }} | |
fetch-depth: 0 | |
- name: Clone website repository on current branch | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
path: _website | |
- name: Setup container | |
run: | | |
${{ matrix.setup_container }} | |
apt install -y -qq rsync | |
- name: Install viskex | |
run: | | |
BACKEND=backend_${{ matrix.backend }} | |
python3 -m pip install .[${BACKEND},tutorials] | |
- name: Install nbconvert | |
run: | | |
python3 -m pip install -q nbconvert | |
- name: Copy jupyter template from website repository | |
run: | | |
jupyter --paths --json > /tmp/jupyter-paths | |
JUPYTER_SHARE=$(python3 -c 'import json; data = json.loads(open("/tmp/jupyter-paths", "r").read()); print(data["data"][-1])') | |
mkdir -p ${JUPYTER_SHARE}/nbconvert/templates | |
cp -rf _website/share/jupyter/nbconvert/templates/html/viskex ${JUPYTER_SHARE}/nbconvert/templates/ | |
rm /tmp/jupyter-paths | |
- name: Convert notebooks to html | |
run: | | |
NO_TESTS_COLLECTED=5 | |
python3 -m pytest --ipynb-action=create-notebooks --tag-collapse --work-dir=.ipynb_nbconvert tutorials || (($?==$NO_TESTS_COLLECTED)) | |
find tutorials -type d -name .ipynb_nbconvert -exec rsync -avz --remove-source-files --include="*.ipynb" --exclude="*" {}/ {}/.. \; | |
NOTEBOOKS_TO_RUN=() | |
while read -r PATTERN; do | |
NOTEBOOKS_TO_RUN+=($(find tutorials -wholename $(echo ${PATTERN} | sed 's|\"||g'))) | |
done <<< $(printf "%s" "${{ matrix.notebook_pattern }}") | |
mkdir -p _converted | |
export DISPLAY=":99" | |
Xvfb $DISPLAY -screen 0 1024x768x24 > /dev/null 2>&1 & | |
for NOTEBOOK in "${NOTEBOOKS_TO_RUN[@]}"; do | |
NOTEBOOK_DIRNAME=$(dirname "${NOTEBOOK}") | |
NOTEBOOK_OUTPUT_DIRNAME=${GITHUB_WORKSPACE}/_converted/${NOTEBOOK_DIRNAME} | |
NOTEBOOK_BASENAME=$(basename "${NOTEBOOK}") | |
NOTEBOOK_OUTPUT_BASENAME=${NOTEBOOK_BASENAME/.ipynb/.html} | |
pushd ${NOTEBOOK_DIRNAME} | |
VISKEX_PYVISTA_BACKEND="html" jupyter nbconvert --to html --template viskex --execute --output-dir ${NOTEBOOK_OUTPUT_DIRNAME} ${NOTEBOOK_BASENAME} | |
popd | |
pushd ${NOTEBOOK_OUTPUT_DIRNAME} | |
sed -i "s|\"https://colab.research.google.com\"|\"https://colab.research.google.com/github/viskex/viskex.github.io/blob/open-in-colab/${NOTEBOOK_DIRNAME}/${NOTEBOOK_BASENAME}\"|g" ${NOTEBOOK_OUTPUT_BASENAME} | |
sed -i "s|\"https://kaggle.com\"|\"https://kaggle.com/kernels/welcome?src=https://github.com/viskex/viskex.github.io/blob/open-in-kaggle/${NOTEBOOK_DIRNAME}/${NOTEBOOK_BASENAME}\"|g" ${NOTEBOOK_OUTPUT_BASENAME} | |
sed -i "s|\"https://github.com\"|\"https://github.com/viskex/viskex/blob/main/${NOTEBOOK_DIRNAME}/${NOTEBOOK_BASENAME}\"|g" ${NOTEBOOK_OUTPUT_BASENAME} | |
popd | |
python3 _website/share/jupyter/add_whats_next.py ${NOTEBOOK_DIRNAME} ${NOTEBOOK_OUTPUT_BASENAME} ${NOTEBOOK_OUTPUT_DIRNAME}/${NOTEBOOK_OUTPUT_BASENAME} | |
done | |
shell: bash | |
- name: Store converted notebooks as artifacts | |
uses: actions/upload-artifact@v4 | |
with: | |
name: converted-notebooks-${{ matrix.backend }} | |
path: _converted | |
retention-days: 1 | |
website: | |
runs-on: ubuntu-latest | |
needs: [convert_notebooks] | |
steps: | |
- name: Clone website repository on current branch | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Clone website repository on gh-pages branch | |
uses: actions/checkout@v4 | |
with: | |
ref: gh-pages | |
fetch-depth: 0 | |
path: _build/html | |
- name: Install dependencies | |
run: | | |
python3 -m pip install --break-system-packages -q sphinx-material | |
- name: Download converted notebooks from artifacts | |
uses: actions/download-artifact@v4 | |
with: | |
path: _converted | |
- name: Generate sphinx website | |
run: | | |
rm -rf _build/html/* | |
rsync -avh --remove-source-files _converted/converted-notebooks-*/ _build/html/ | |
rm -rf _converted | |
python3 -m sphinx -W -b html . _build/html | |
- name: Fix permissions | |
run: | | |
sudo chown $USER _build -R | |
- name: Remove unnecessary .doctrees folder | |
run: | | |
rm -rf _build/html/.doctrees | |
- name: Clean up old Github pages branch | |
if: github.repository == 'viskex/viskex.github.io' && github.event.inputs.reset_github_pages == 'yes' | |
run: | | |
if git ls-remote origin | grep -sw gh-pages 2>&1 >/dev/null; then git push origin --delete gh-pages; fi | |
- name: Check that no tutorials have been deleted | |
run: | | |
pushd _build/html | |
if [[ $(git ls-files --deleted tutorials | wc -l) -gt 0 ]]; then | |
echo "The following tutorials have been deleted:" | |
git ls-files --deleted tutorials | |
exit 1 | |
fi | |
popd | |
- name: Deploy to GitHub pages | |
if: github.repository == 'viskex/viskex.github.io' && github.ref == 'refs/heads/main' | |
run: | | |
SHA_SHORT=$(git rev-parse --short HEAD) | |
pushd _build/html | |
git config user.name "GitHub Actions" | |
git config user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
git add . | |
git pull origin gh-pages | |
[ -n "$(git status --porcelain=v1 2>/dev/null)" ] && git commit -m "deploy: ${SHA_SHORT}" | |
git push origin gh-pages | |
popd | |
shell: bash | |
- name: Deploy to GitHub artifacts | |
if: github.repository == 'viskex/viskex.github.io' && github.ref != 'refs/heads/main' | |
uses: actions/upload-artifact@v4 | |
with: | |
name: website | |
path: | | |
_build/html | |
!_build/html/.git | |
retention-days: 1 | |
warn: | |
runs-on: ubuntu-latest | |
if: github.repository == 'viskex/viskex.github.io' && github.ref == 'refs/heads/main' && github.event_name == 'schedule' | |
steps: | |
- name: Warn if scheduled workflow is about to be disabled | |
uses: fem-on-colab/warn-workflow-about-to-be-disabled-action@main | |
with: | |
workflow-filename: website.yml | |
days-elapsed: 50 |