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ctr26 wants to merge 38 commits intouhlmanngroup:masteruhlmanngroup/nuclear_phenotyping:masterfrom ctr26:devctr26/nuclear_phenotyping:devCopy head branch name to clipboard

+1,685-15

Commits

Commits on Apr 10, 2023

• adding a config file

  ctr26

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  965224c

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• moving config

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  7411fe6

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• Adding vscode debug support for snakemake

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  531cf38

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• relative paths arent important

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• git ignore results

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  ab74627

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• remove old config

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Commits on Apr 11, 2023

• Fixing (adding) splinedist infer and env

  ctr26

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  5a47e4d

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• Adding splinedist models

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  9c5ee78

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• and adding npy files

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Commits on Apr 12, 2023

• splinedist training script

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  8b389f7

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• First attempt at supervisely snakemake

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Commits on Apr 13, 2023

• Broken, trying to fix

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Commits on Jun 19, 2023

• Adding stardist

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• Adding unet

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  a04ade3

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• General snakemake fixes

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• Adding cellpose to supervisely (check)

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• General supervisely scripts

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  2908d98

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• supervisely yaml

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  6d44e2a

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• Draft of supervisely snakemake

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  51a31d2

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• adding a config file

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  72def2f

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• Trying to deliniate rules

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  c00a743

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• refactoring supervisely + config

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  9342dd3

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• forgot to add rules

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  28e54a9

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• broken logic fixed

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  1d3e1ac

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Commits on Jun 21, 2023

• fixing bugs

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  d32b343

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• fixing bug with bad files

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  efd8d33

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• fixing bug with bad files

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  527b429

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• fixing bug with bad files

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  cd7e29b

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• fixing envs

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• mixing env file

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  a3de2f6

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• Fixing png convert env

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  22c854b

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• uncommenting imports

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Commits on Jun 22, 2023

• I think I've fixed all the supervisely sampling stuff

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• adding seed random

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  fc10f60

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• Ok I think I've fixed all thje bad looped logic

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  b31118c

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• minor fixes to supervisely

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Commits on Jun 26, 2023

• attempt to add metadata to supervisely

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• typo in tag name?

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