Quickly search, compare, and analyze genomic and metagenomic data sets.

Amplicon sequencing analysis workflow using DADA2 and QIIME2

Accurate metagenomic profiling && Fast large-scale sequence/genome searching

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Fast and space-efficient taxonomic classification of long reads

TAXnomic Profile Aggregation and STAndardisation

Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes

Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-level taxonomic profiling (Bacteria, Archaea and Eukaryotes), functional analysis and strain-level population structure inference.

mSWEEP High-resolution sweep metagenomics using fast probabilistic inference

A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.

Parallelised and automated construction of metagenomic classifier databases of different tools

Metabarcoding analysis pipeline, using DADA2 and qiime2

A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG