Building new version of xspec-modeldonly 6.22

build_local.sh

@@ -0,0 +1,125 @@
+#!/usr/bin/env bash
+TRAVIS_OS_NAME="unknown"
+
+if [[ "$OSTYPE" == "linux-gnu" ]]; then
+
+        # Linux
+
+        TRAVIS_OS_NAME="linux"
+
+
+elif [[ "$OSTYPE" == darwin* ]]; then
+
+        # Mac OSX
+
+        TRAVIS_OS_NAME="osx"
+
+
+elif [[ "$OSTYPE" == "cygwin" ]]; then
+
+        # POSIX compatibility layer and Linux environment emulation for Windows
+
+        TRAVIS_OS_NAME="linux"
+
+else
+
+        # Unknown.
+
+        echo "Could not guess your OS. Exiting."
+
+        exit 1
+
+fi
+
+echo "Running on ${TRAVIS_OS_NAME}"
+
+TRAVIS_PYTHON_VERSION=2.7
+TRAVIS_BUILD_NUMBER=0
+
+ENVNAME=xsmodelsonly_test_$TRAVIS_PYTHON_VERSION
+
+echo "Python version: ${TRAVIS_PYTHON_VERSION}"
+
+# Make sure we fail in case of errors
+set -e
+
+# Environment
+# libgfortranver="3.0"
+
+UPDATE_CONDA=true
+
+#if [[ ${TRAVIS_OS_NAME} == linux ]];
+#then
+#    miniconda_os=Linux
+#    compilers="gcc_linux-64 gxx_linux-64 gfortran_linux-64"
+#else  # osx
+#    miniconda_os=MacOSX
+#    compilers="clang_osx-64 clangxx_osx-64 gfortran_osx-64"
+#   # On macOS we also need the conda libx11 libraries used to build xspec
+#    # We also need to pin down ncurses, for now only on macos.
+#    xorg="xorg-libx11 ncurses=5"
+#fi
+
+
+
+if $UPDATE_CONDA ; then
+    # Update conda
+    echo "Update conda..."
+    conda update --yes -q conda conda-build
+fi
+
+if [[ ${TRAVIS_OS_NAME} == osx ]];
+then
+    conda config --add channels conda-forge
+fi
+
+# Answer yes to all questions (non-interactive)
+conda config --set always_yes true
+
+# We will upload explicitly at the end, if successful
+conda config --set anaconda_upload no
+
+# Create test environment
+echo "Create test environment..."
+
+conda create --yes --name $ENVNAME -c conda-forge python=$TRAVIS_PYTHON_VERSION
+
+# Make sure conda-forge is the first channel
+conda config --add channels conda-forge
+
+conda config --add channels defaults
+
+# Activate test environment
+echo "Activate test environment..."
+
+#source $HOME/work/fermi/miniconda3/etc/profile.d/conda.sh
+#conda activate $ENVNAME
+source activate $ENVNAME
+
+# Build package
+echo "Build package..."
+if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then
+    conda build --python=$TRAVIS_PYTHON_VERSION conda_recipe/xspec-modelsonly
+    #conda index $HOME/work/fermi/miniconda3/conda-bld
+    conda index $HOME/miniconda/conda-bld
+else
+    # there is some strange error about the prefix length
+    conda build --no-build-id --python=$TRAVIS_PYTHON_VERSION conda_recipe/xspec-modelsonly
+    conda index $HOME/miniconda/conda-bld
+fi
+echo "======> installing..."
+conda install --use-local -c conda-forge xspec-modelsonly
+
+# Run tests
+#cd astromodels/tests
+#python -m pytest -vv --cov=astromodels # -k "not slow"
+
+# Codecov needs to run in the main git repo
+
+## Upload coverage measurements if we are on Linux
+#if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then
+
+#    echo "********************************** COVERAGE ******************************"
+#    codecov -t 493c9a2d-42fc-40d6-8e65-24e681efaa1e#
+
+#fi

conda_build_config.yaml

@@ -0,0 +1,2 @@
+CONDA_BUILD_SYSROOT:
+  - /opt/MacOSX10.9.sdk        # [osx]

conda_recipe/xspec-modelsonly/build.sh

@@ -1,25 +1,32 @@
 cd BUILD_DIR
 
+# We need a custom include and library path to use the packages installed
+# in the build environment
+
+export CFLAGS="-I$CONDA_PREFIX/include"
+export CXXFLAGS="-std=c++11 -Wno-c++11-narrowing -I$CONDA_PREFIX/include"
+export LDFLAGS="$LDFLAGS -L$CONDA_PREFIX/lib"
+
+#export CFLAGS="${CFLAGS} -I${PREFIX}/include -O2 -Wall --pedantic -Wno-comment -Wno-long-long -g  -ffloat-store -fPIC"
+#export CXXFLAGS="${CXXFLAGS} -I${PREFIX}/include -O2 -std=c++11 -Wno-c++11-narrowing -Wall --pedantic -Wno-comment -Wno-long-long -g -ffloat-store -fPIC"
+#export CPPFLAGS="${CXXFLAGS} -I${PREFIX}/include"
+
 if [ "$(uname)" == "Linux" ]; then
 
-    # We need a custom include and library path to use the packages installed
-    # in the build environment
-    export CFLAGS='-I${PREFIX}/include -O2 -Wall --pedantic -Wno-comment -Wno-long-long -g  -ffloat-store -fPIC'
-    export CXXFLAGS='-I${PREFIX}/include -O2 -Wall --pedantic -Wno-comment -Wno-long-long -g  -ffloat-store -fPIC'
-    export CPPFLAGS="-I${PREFIX}/include"
-    export LDFLAGS="-L${PREFIX}/lib"
-
     ./configure --prefix=${SRC_DIR}/xspec-modelsonly-build
-    
-    ./hmake 'XSLM_USER_FLAGS="-I${PREFIX}/include"' 'XSLM_USER_LIBS="-L${PREFIX}/lib -lCCfits -lcfitsio -lwcslib"'
+
+    ./hmake 'XSLM_USER_FLAGS="-I${PREFIX}/include"' 'XSLM_USER_LIBS="-L${PREFIX}/lib -lCCfits -lcfitsio -lwcslib -lgfortran"'
 
 fi
 
 if [ "$(uname)" == "Darwin" ]; then
 
-    ./configure --prefix=${SRC_DIR}/xspec-modelsonly-build
+    # Build for a fairly old mac to ensure portability
 
-    ./hmake 'LDFLAGS_CXX=-headerpad_max_install_names -lcfitsio -lCCfits -lccfits -lwcs'
+    ./configure --prefix=${SRC_DIR}/xspec-modelsonly-build
+    make HD_ADD_SHLIB_LIBS=yes
+    make install
+    #./hmake 'LDFLAGS_CXX=-headerpad_max_install_names -lcfitsio -lCCfits -lccfits -lwcs -lgfortran' 'XSLM_USER_LIBS="-L${PREFIX}/lib -lCCfits -lcfitsio -lwcslib -lgfortran"'
 
 fi
 

conda_recipe/xspec-modelsonly/meta.yaml

@@ -1,26 +1,41 @@
 package:
    name: xspec-modelsonly
-   version: "6.20"
+   version: "6.22.1"
 
 source:
-  #path: xspec-modelsonly-v6.20-no-big-data.tar.gz
-  #url: https://heasarc.gsfc.nasa.gov/FTP/software/lheasoft/release/xspec-modelsonly-v6.21.tar.gz
-  url: file:///work/xspec-modelsonly-v6.20-no-big-data.tar.gz
+#  md5: 0abea9e1609fcdc2c3e3ada92043d17b
+  url: https://heasarc.gsfc.nasa.gov/FTP/software/lheasoft/lheasoft6.22.1/xspec-modelsonly-v6.22.1.tar.gz
+  fn: xspec-modelsonly-v6.22.1.tar.gz
 
 build:
   number: 0
 
 requirements:
-
- build: 
-   - cfitsio
-   - ccfits
-   - wcslib
-   - readline
-
- run:
-   - cfitsio
-   - ccfits
-   - wcslib
-   - readline
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - {{ compiler('fortran') }}
+    - ncurses==5.*
+    - readline==6.2
+    - cfitsio
+    - ccfits
+    - wcslib
+    - libgfortran
+    #- clang_osx-64 # [osx]
+    #- clangxx_osx-64 # [osx]
+    #- gfortran_osx-64 # [osx]
+  host:
+    - ncurses==5.*
+    - readline==6.2
 
+# Note that ncurses is only needed to build but I am not
+# sure it's needed at all at run-time. To keep things
+# safe and simple I am keeping it, but removing the version
+# number since it was only there to make `configure` happy
+# and there is no evidence ncurses is required in the
+# first place.
+#  run:
+#    - readline
+
+about:
+  home: https://heasarc.gsfc.nasa.gov/xanadu/xspec/