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pboesu committed Feb 2, 2021
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2 changes: 1 addition & 1 deletion README.md
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This repository contains data and code for the manuscript

*"Interventions can shift the thermal optimum for disease: Evidence from human schistosomiasis"*
*"Interventions can shift the thermal optimum for parasitic disease transmission"*
by K.H. Nguyen<sup>1*</sup>, P.H. Boersch-Supan<sup>2*</sup>, R.B. Hartman, S.Y. Mendiola, V.J. Harwood, D.J. Civitello, J.R. Rohr (2021)

Corresponding authors:
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2 changes: 1 addition & 1 deletion data/cercarial_shedding_observations.csv
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#name: shedding
#title: Temperature-specific shedding success of Schistosoma mansoni cercaria from
# Biomphalaria glabrata snails
#author: K.H. Nguyen, P.H. Boersch-Supan, V.J. Harwood, J.R. Rohr
#author: K.H. Nguyen, P.H. Boersch-Supan, R.B. Hartman, S.Y. Mendiola, V.J. Harwood, D.J. Civitello, J.R. Rohr
#path: https://github.com/pboesu/schistosomiasis
#fields:
#- name: temperature
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2 changes: 1 addition & 1 deletion data/trait_observations.csv
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#title: Temperature-specific observations of various Schistosoma mansoni and Biomphalaria
# traits
#path: https://github.com/pboesu/schistosomiasis
#author: K.H. Nguyen, P.H. Boersch-Supan, V.J. Harwood, J.R. Rohr
#author: K.H. Nguyen, P.H. Boersch-Supan, R.B. Hartman, S.Y. Mendiola, V.J. Harwood, D.J. Civitello, J.R. Rohr
#fields:
#- name: temperature
# type: number
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4 changes: 2 additions & 2 deletions predict_temperature_specific_R0.R
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# Example code to predict temperature-specific R0 curves for schistosomiasis with and without snail control
# Supplement to "Interventions can shift the thermal optimum for disease: Evidence from human schistosomiasis" by K.H. Nguyen, P.H. Boersch-Supan, V.J. Harwood, J.R. Rohr (2020)
# Supplement to "Interventions can shift the thermal optimum for parasitic disease transmission" by K.H. Nguyen, P.H. Boersch-Supan, R.B. Hartman, S.Y. Mendiola, V.J. Harwood, D.J. Civitello, J.R. Rohr (2021)
# https://github.com/pboesu/schistosomiasis

library(dplyr)
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}

#plot normalised R0 curves
plot(R_0_temp_no_control/max(R_0_temp_no_control) ~ clean_parameters_wide_no_control$temperature, type = 'l', main='', xlab='Temperature (°C)', ylab = latex2exp::TeX('R_{0}/max(R_{0})'), lwd = 2)
plot(R_0_temp_no_control/max(R_0_temp_no_control) ~ clean_parameters_wide_no_control$temperature, type = 'l', main='', xlab='Temperature (°C)', ylab = latex2exp::TeX('R_{0}/max(R_{0})'), lwd = 2)
lines(R_0_temp_snail_control/max(R_0_temp_snail_control) ~ clean_parameters_wide$temperature, type = 'l', col = 'darkgreen',lty = 1, lwd = 2)
legend('topright', lwd = c(2,2), col = c('black','darkgreen'), legend = c('no control','snail control'), bty = 'n', cex = 0.8)

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