update citation formats

R/rucrdtw-package.r

@@ -18,8 +18,8 @@
 #'
 #' \code{vignette("using_rucrdtw", package = "rucrdtw")}
 
-#' @references Rakthanmanon, Thanawin, Bilson Campana, Abdullah Mueen, Gustavo Batista, Brandon Westover, Qiang Zhu, Jesin Zakaria, and Eamonn Keogh. 2012. Searching and Mining Trillions of Time Series Subsequences Under Dynamic Time Warping. In Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 262-70. ACM. doi:\href{http://dx.doi.org/10.1145/2339530.2339576}{10.1145/2339530.2339576}.
-#' @references Giorgino, Toni (2009). Computing and Visualizing Dynamic Time Warping Alignments in R: The dtw Package. Journal of Statistical Software, 31(7), 1-24, doi:\href{http://dx.doi.org/10.18637/jss.v031.i07}{10.18637/jss.v031.i07}.
+#' @references Rakthanmanon, Thanawin, Bilson Campana, Abdullah Mueen, Gustavo Batista, Brandon Westover, Qiang Zhu, Jesin Zakaria, and Eamonn Keogh. 2012. Searching and Mining Trillions of Time Series Subsequences Under Dynamic Time Warping. In Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 262-70. ACM. doi:\doi{10.1145/2339530.2339576}.
+#' @references Giorgino, Toni (2009). Computing and Visualizing Dynamic Time Warping Alignments in R: The dtw Package. Journal of Statistical Software, 31(7), 1-24, \doi{10.18637/jss.v031.i07}.
 #' @references UCR Suite Website: \url{http://www.cs.ucr.edu/~eamonn/UCRsuite.html}
 #' @seealso \link[dtw]{dtw-package}
 #' @keywords internal

R/ucrdtw.R

@@ -50,7 +50,7 @@ summary.ucred <- function(object, ...){
 #'   \item \strong{prunedKeogh2:} Percentage of subsequences that were pruned based on the LB-Keogh-EC criterion.
 #'   \item \strong{dtwCalc:} Percentage of subsequences for which the full DTW distance was calculated.
 #' }
-#' @references Giorgino, Toni (2009). Computing and Visualizing Dynamic Time Warping Alignments in R: The dtw Package. Journal of Statistical Software, 31(7), 1-24, doi:\href{http://dx.doi.org/10.18637/jss.v031.i07}{10.18637/jss.v031.i07}.
+#' @references Giorgino, Toni (2009). Computing and Visualizing Dynamic Time Warping Alignments in R: The dtw Package. Journal of Statistical Software, 31(7), 1-24, doi:\doi{10.18637/jss.v031.i07}.
 #' @examples
 #' #load example data
 #' data("synthetic_control")

cran-comments.md

@@ -1,3 +1,6 @@
+## Release summary
+This is a minor update of the previous version it addresses a breaking change in roxygen2 that resulted in missing aliases for the package overview help file. 
+It also addresses CRAN check notes about removing an explicit C++11 specification.
 
 ## Test environments
 * Windows Server 2022 x64 (build 20348; on github-actions) R version 4.3.1 (2023-06-16 ucrt)

inst/CITATION

@@ -3,7 +3,7 @@ citHeader("To cite rucrdtw in publications, please use:")
 year <- sub("-.*", "", meta$Date)
 note <- sprintf("R package version %s", meta$Version)
 
-citEntry(entry = "Article",
+bibentry(bibtype = "Article",
          title = "{rucrdtw}: Fast time series subsequence search in R",
          author = c(person("Philipp", "Boersch-Supan")),
          year = 2016,
@@ -12,36 +12,24 @@ citEntry(entry = "Article",
          issue = "7",
          pages = "1--2",
          doi = "10.21105/joss.00100",
-         url = "http://doi.org/10.21105/joss.00100",
+         url = "http://doi.org/10.21105/joss.00100")
 
-         textVersion  =
-           paste("Boersch-Supan (2016).",
-                 "rucrdtw:  Fast time series subsequence search in R.",
-                 "The Journal of Open Source Software",
-                 "URL http://doi.org/10.21105/joss.00100"))
 
-
-citEntry(entry = "InProceedings",
+bibentry(bibtype = "InProceedings",
          title        = "Searching and mining trillions of time series subsequences under dynamic time warping",
-         author       = personList(c(person("Thanawin", "Rakthanmanon"),
+         author       = c(person("Thanawin", "Rakthanmanon"),
                                      person("Bilson", "Campana"),
                                      person("Abdullah", "Mueen"),
                                      person("Gustavo", "Batista"),
                                      person("Brandon", "Westover"),
                                      person("Qiang", "Zhu"),
                                      person("Jesin", "Zakaria"),
-                                     person("Eamonn", "Keogh"))),
+                                     person("Eamonn", "Keogh")),
          booktitle    = "Proceedings of the 18th {ACM} {SIGKDD} international conference on Knowledge discovery and data mining",
          year         = "2012",
          pages        = "262--270",
          organization = "ACM",
          doi          = "10.1145/2339530.2339576",
-         url          = "http://doi.org/10.1145/2339530.2339576",
-
-         textVersion  =
-           paste("Rakthanmanon et al. (2012).",
-                 "Searching and mining trillions of time series subsequences under dynamic time warping.",
-                 "SIGKDD",
-                 "URL http://doi.org/10.1145/2339530.2339576")
+         url          = "http://doi.org/10.1145/2339530.2339576"
 )