fix typo visium notebook

owkin · Jan 31, 2025 · c2d5af1 · c2d5af1
1 parent 7ac040d
commit c2d5af1
Showing 1 changed file with 7 additions and 6 deletions.
diff --git a/notebooks/visium_starter_mosaic.ipynb b/notebooks/visium_starter_mosaic.ipynb
@@ -39,19 +39,19 @@
     "import decoupler as dc\n",
     "import omnipath\n",
     "\n",
-    "from gbmosaic.utils.visium_functions import (\n",
+    "from gbmhackathon.utils.visium_functions import (\n",
     "    normalize_anndata_wrapper,\n",
     "    convert_obsm_to_adata\n",
     ")\n",
-    "from gbmosaic.viz.visium_functions import (\n",
+    "from gbmhackathon.viz.visium_functions import (\n",
     "    plot_spatial_expression,\n",
     "    plot_obsm\n",
     ")\n",
-    "from gbmosaic.stats.visium_functions import (\n",
+    "from gbmhackathon.stats.visium_functions import (\n",
     "    perform_multi_clustering,\n",
     "    quantify_cell_population_activity\n",
     ")\n",
-    "from gbmosaic import HKDataCenter\n",
+    "from gbmhackathon import MosaicDataset\n",
     "\n",
     "import matplotlib as mpl\n",
     "mpl.rcParams['figure.dpi'] = 1200"
@@ -70,10 +70,11 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "visium_dict = HKDataCenter.load_visium(\n",
+    "visium_dict = MosaicDataset.load_visium(\n",
     "    sample_list=[\"HK_G_022a_vis\", \"HK_G_024a_vis\", \"HK_G_030a_vis\"], # remove this argument to load all available samples)\n",
     "    resolution=\"hires\"\n",
-    ")"
+    ")\n",
+    "# Note that loading all the samples may take up to 4 minutes and requires more memory"
    ]
   },
   {