Repositories list

• qupath-extension-omero

  Public
  QuPath extension to work with images through OMERO's APIs

  Java

  •

  Apache License 2.0

  •1•4•27•0•Updated Feb 7, 2025Feb 7, 2025

• qupath-extension-bioimageio

  Public
  A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

  Java

  •

  Apache License 2.0

  •3•4•3•1•Updated Feb 7, 2025Feb 7, 2025

• extension-catalog-model

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• qupath-catalog

  Public
  The catalog containing the QuPath extensions developed by the QuPath team

  Apache License 2.0

  •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• qupath

  Public
  QuPath - Open-source bioimage analysis for research

  groovyopencvmachine-learning+ 13imagejjavafximage-processinghistologycell-segmentationbioimage-informaticsdigital-pathology+ 6

  Java

  •

  GNU General Public License v3.0

  •287•1.1k•35•4•Updated Feb 7, 2025Feb 7, 2025

• qupath-extension-stardist

  Public
  QuPath extension to run StarDist nucleus detection

  Java

  •

  Apache License 2.0

  •7•37•2•0•Updated Feb 6, 2025Feb 6, 2025

• qupath-bioimageio-spec

  Public
  Support for parsing the BioImage Model Zoo spec in Java

  Java

  •

  MIT License

  •2•0•0•1•Updated Feb 6, 2025Feb 6, 2025

• qupath-extension-djl

  Public
  A QuPath extension for working with Deep Java Library (https://djl.ai)

  Java

  •

  Apache License 2.0

  •5•6•2•0•Updated Feb 5, 2025Feb 5, 2025

• extension-manager

  Public
  A manager for catalogs and extensions.

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

• qupath-gradle-scripting-project

  Public template
  Groovy

  •3•0•0•0•Updated Feb 3, 2025Feb 3, 2025

• qupath-docs

  Public
  QuPath documentation

  Python

  •23•19•7•1•Updated Feb 3, 2025Feb 3, 2025

• qubalab

  Public
  Lab for quantitative bioimage analysis experiments in Python

  Python

  •

  Apache License 2.0

  •4•11•0•0•Updated Jan 31, 2025Jan 31, 2025

• qupath-extension-instanseg

  Public
  The official QuPath extension for InstanSeg

  Java

  •

  Apache License 2.0

  •6•11•3•1•Updated Jan 17, 2025Jan 17, 2025

• qupath-extension-template

  Public template
  Template to help create a new QuPath extension

  Java

  •7•16•0•0•Updated Jan 10, 2025Jan 10, 2025

• qupath-fxtras

  Public
  Reusable JavaFX tools for QuPath (and beyond)

  Java

  •

  Apache License 2.0

  •4•5•0•0•Updated Jan 7, 2025Jan 7, 2025

• qupath-extension-training

  Public
  A QuPath extension to help with learning the software

  Java

  •

  Apache License 2.0

  •2•1•0•0•Updated Dec 13, 2024Dec 13, 2024

• qupath-extension-wsinfer

  Public
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/

  Java

  •

  Apache License 2.0

  •8•23•3•0•Updated Dec 10, 2024Dec 10, 2024

• qupath-extension-align

  Public
  QuPath extension to interactively align images

  Java

  •

  GNU General Public License v3.0

  •7•21•0•3•Updated Dec 10, 2024Dec 10, 2024

• c-blosc-jars

  Public
  JAR files for the c-blosc native library.

  1•1•0•0•Updated Dec 10, 2024Dec 10, 2024

• openslide-jars

  Public
  Ruby

  •2•0•0•0•Updated Dec 10, 2024Dec 10, 2024

• qupath-extension-jpen

  Public
  QuPath extension using JPen for graphics tablet input

  Java

  •

  GNU General Public License v3.0

  •3•1•0•0•Updated Dec 6, 2024Dec 6, 2024

• qupath-extension-py4j

  Public
  A QuPath extension for linking up to Python via Py4J (https://www.py4j.org)

  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated Dec 6, 2024Dec 6, 2024

• qupath-gradle-plugin

  Public
  Gradle plugins to help create QuPath extensions

  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated Dec 6, 2024Dec 6, 2024

• i2k-qupath-for-python-programmers

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •1•7•0•0•Updated Nov 25, 2024Nov 25, 2024

• qubalab-docs

  Public
  HTML

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

• i2k2024

  Public
  Groovy

  •2•3•0•1•Updated Oct 29, 2024Oct 29, 2024

• qupath.github.io

  Public
  GitHub pages site

  SCSS

  •

  MIT License

  •4•2•0•2•Updated Oct 28, 2024Oct 28, 2024

• javadoc-viewer

  Public
  A simple JavaFX Javadoc viewer

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

• log-viewer

  Public
  Java

  •

  Apache License 2.0

  •2•5•3•0•Updated Sep 10, 2024Sep 10, 2024

• qupath-extension-omero-web

  Public
  QuPath extension to work with images through OMERO's web API

  Java

  •

  GNU General Public License v3.0

  •11•8•9•0•Updated May 31, 2024May 31, 2024