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Starred repositories

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Python 45 5 Updated Mar 10, 2025

a *biosynformatic* fingerprint to explore natural product distance and diversity

Jupyter Notebook 16 1 Updated Feb 12, 2025

Small crate to measure the time requirements of syn parsing with different usages.

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Python and Rust library for loading, saving, and manipulating taxonomic trees

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Sophia: a Rust toolkit for RDF and Linked Data

Rust 246 25 Updated Mar 4, 2025

A Rust library for parsing ProForma peptides and matching them against MS spectra, formally known as rustyms

Rust 25 7 Updated Mar 7, 2025
Python 5 Updated Mar 9, 2025

Robust representation of semantically constrained graphs, in particular for molecules in chemistry

Python 716 132 Updated Jan 15, 2025

A Shiny web app for creating worklists for LC-MS experiments

R 2 Updated May 4, 2020

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Java 5 1 Updated Nov 19, 2024

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Rust 2 1 Updated Aug 23, 2024

asari, metabolomics data preprocessing

Python 45 12 Updated Mar 6, 2025

PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.

Python 82 36 Updated Mar 5, 2025

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Rust 10 4 Updated Jan 12, 2025

A curated list of various semantic web and linked data resources.

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A clean documentation and blog theme for your Hugo site based on Bootstrap 5

HTML 173 60 Updated Mar 4, 2025

Hugo website with a map to practice collaboration in class

HTML 1 Updated May 22, 2022

Hugo Shortcodes for inserting a OSM Map, Marker or Track into your posts by using leaflet

JavaScript 57 11 Updated Aug 28, 2023

Work with BagIt packages from Python.

Python 229 86 Updated Oct 16, 2024

HUPO-PSI mass spectrometry CV

Python 30 38 Updated Feb 28, 2025

Python package helping to work with the MESH dataset.

Python 2 Updated Oct 11, 2024

Write up on how to use compact identifiers in project reports.

5 3 Updated Oct 25, 2024

An extremely fast Python package and project manager, written in Rust.

Rust 42,883 1,215 Updated Mar 9, 2025

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HTML 34 21 Updated Mar 10, 2025

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

Java 98 28 Updated Jan 22, 2025

The MinHashed Atom Pair fingerprint of radius 2

CSS 3 Updated Oct 13, 2024
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