classified digestive tube junctions as anatomical junctions (material…

…) rather than boundaries (immaterial). Fixes issue #314

uberon_edit.obo

@@ -135299,17 +135299,17 @@ relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000951"} ! Vertebrata
 [Term]
 id: UBERON:0006235
 name: foregut-midgut junction
+def: "An anatomical junctions that overlaps the foregut and midgut." [OBOL:automatic]
 subset: emapa_ehdaa2
 xref: EMAPA:16363 ! foregut-midgut junction
 xref: EHDAA2:0000569 ! foregut-midgut junction
 xref: VHOG:0000291 ! foregut-midgut junction
 xref: EHDAA:526 ! foregut-midgut junction
-intersection_of: UBERON:0000015 ! anatomical boundary
-intersection_of: adjacent_to UBERON:0001041 ! foregut
-intersection_of: adjacent_to UBERON:0001045 ! midgut
+intersection_of: UBERON:0007651 ! anatomical junction
+intersection_of: overlaps UBERON:0001041 ! foregut
+intersection_of: overlaps UBERON:0001045 ! midgut
 relationship: part_of UBERON:0001555 ! digestive tract
 property_value: homology_notes "Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[well established][VHOG]" xsd:string {external_class="VHOG:0000291", ontology="VHOG", source="ISBN:978-0521617147 Stevens CE and Hume ID\, Comparative physiology of the vertebrate digestive system (2004) p.11", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"}
-def: "An anatomical boundary that adjacent_to a foregut and adjacent_to a midgut." [OBOL:automatic]
 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000291"} ! Vertebrata
 
 [Term]
@@ -135713,16 +135713,16 @@ relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001121"} ! Vertebrata
 [Term]
 id: UBERON:0006264
 name: mouth-foregut junction
+def: "An anatomical junctions that overlaps the mouth and foregut." [OBOL:automatic]
 subset: emapa_ehdaa2
 xref: EMAPA:16258 ! mouth-foregut junction
 xref: RETIRED_EHDAA2:0001205 ! mouth-foregut junction
 xref: VHOG:0000592 ! mouth-foregut junction
 xref: EHDAA:534 ! mouth-foregut junction
-intersection_of: UBERON:0000015 ! anatomical boundary
-intersection_of: adjacent_to UBERON:0001041 ! foregut
-intersection_of: adjacent_to UBERON:0000165 ! mouth
+intersection_of: UBERON:0007651 ! anatomical junction
+intersection_of: overlaps UBERON:0001041 ! foregut
+intersection_of: overlaps UBERON:0000165 ! mouth
 relationship: part_of UBERON:0005409 ! gastrointestinal system
-def: "An anatomical boundary that adjacent_to a mouth and adjacent_to a foregut." [OBOL:automatic]
 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000592"} ! Vertebrata
 
 [Term]
@@ -147908,6 +147908,8 @@ subset: emapa_ehdaa2
 is_a: UBERON:0000490 ! unilaminar epithelium
 intersection_of: UBERON:0000483 ! epithelium
 intersection_of: part_of UBERON:0006235 ! foregut-midgut junction
+relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium
+relationship: develops_from UBERON:0009550 {source="EHDAA2"} ! endoderm of foregut-midgut junction
 xref: EHDAA2:0000573 ! foregut-midgut junction epithelium
 xref: EMAPA:16564 ! epithelium of foregut-midgut junction
 def: "An epithelium that is part of a foregut-midgut junction." [OBOL:automatic]