GABAergic interneuron pSNpr aSNpr for BICAN Basal Ganglia

[AvolaAmg]

Fixes #2577

[aleixpuigb]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-09-24/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-09-24/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl

Ontology imports

Ontology annotations

GABAergic interneuron of the anterior substantia nigra pars reticulata http://purl.obolibrary.org/obo/CL_4042023

Added

• GABAergic interneuron of the anterior substantia nigra pars reticulata definition "A GABAergic interneuron that has its soma in the anterior section of the substantia nigra pars reticulata. This GABAergic interneuron is characterized by the expression of Six3 and Foxp1 and it develops from Nkx6-2 expressing neuronal progenitors in the ventrolateral midbrain-diencephalon region."

  • database_cross_reference "PMID:36148148"

• GABAergic interneuron of the anterior substantia nigra pars reticulata date "2024-09-23T13:56:01Z"^^dateTime

• GABAergic interneuron of the anterior substantia nigra pars reticulata label "GABAergic interneuron of the anterior substantia nigra pars reticulata"@en

• GABAergic interneuron of the anterior substantia nigra pars reticulata has_related_synonym "aSNpr"

  • has_synonym_type abbreviation

  • database_cross_reference "PMID:36148148"

• GABAergic interneuron of the anterior substantia nigra pars reticulata contributor 0000-0002-0098-8958

• Class: GABAergic interneuron of the anterior substantia nigra pars reticulata

• GABAergic interneuron of the anterior substantia nigra pars reticulata SubClassOf neuron of the substantia nigra

GABAergic interneuron of the posterior substantia nigra pars reticulata http://purl.obolibrary.org/obo/CL_4042024

Added

• GABAergic interneuron of the posterior substantia nigra pars reticulata has_related_synonym "pSNpr"

  • database_cross_reference "PMID:36148148"

• GABAergic interneuron of the posterior substantia nigra pars reticulata contributor 0000-0002-0098-8958

• GABAergic interneuron of the posterior substantia nigra pars reticulata date "2024-09-23T14:49:11Z"^^dateTime

• GABAergic interneuron of the posterior substantia nigra pars reticulata has_related_synonym "A GABAergic interneuron that has its soma in the posterior section of the substantia nigra pars reticulata. This GABAergic interneuron is characterised by the expression of the transcription factors Pax5, Ctip2 and Pou6f2 and it develops from the ventrolateral r1 neuroepithelium expresing NKX61."

  • database_cross_reference "PMID:36148148"

• GABAergic interneuron of the posterior substantia nigra pars reticulata label "GABAergic interneuron of the posterior substantia nigra pars reticulata"@en

• Class: GABAergic interneuron of the posterior substantia nigra pars reticulata

• GABAergic interneuron of the posterior substantia nigra pars reticulata SubClassOf neuron of the substantia nigra

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

GABAergic interneuron of the anterior substantia nigra pars reticulata http://purl.obolibrary.org/obo/CL_4042023

Added

• GABAergic interneuron of the anterior substantia nigra pars reticulata definition "A GABAergic interneuron that has its soma in the anterior section of the substantia nigra pars reticulata. This GABAergic interneuron is characterized by the expression of Six3 and Foxp1 and it develops from Nkx6-2 expressing neuronal progenitors in the ventrolateral midbrain-diencephalon region."

  • database_cross_reference "PMID:36148148"

• GABAergic interneuron of the anterior substantia nigra pars reticulata date "2024-09-23T13:56:01Z"^^dateTime

• GABAergic interneuron of the anterior substantia nigra pars reticulata has_related_synonym "aSNpr"

  • has_synonym_type abbreviation

  • database_cross_reference "PMID:36148148"

• GABAergic interneuron of the anterior substantia nigra pars reticulata contributor 0000-0002-0098-8958

• GABAergic interneuron of the anterior substantia nigra pars reticulata label "GABAergic interneuron of the anterior substantia nigra pars reticulata"@en

• Class: GABAergic interneuron of the anterior substantia nigra pars reticulata

• GABAergic interneuron of the anterior substantia nigra pars reticulata SubClassOf expresses some forkhead box protein P1

• GABAergic interneuron of the anterior substantia nigra pars reticulata SubClassOf neuron of the substantia nigra

• GABAergic interneuron of the anterior substantia nigra pars reticulata SubClassOf expresses some PR_000013047

• GABAergic interneuron of the anterior substantia nigra pars reticulata SubClassOf expresses some PR_000014898

GABAergic interneuron of the posterior substantia nigra pars reticulata http://purl.obolibrary.org/obo/CL_4042024

Added

• GABAergic interneuron of the posterior substantia nigra pars reticulata has_related_synonym "pSNpr"

  • database_cross_reference "PMID:36148148"

• GABAergic interneuron of the posterior substantia nigra pars reticulata contributor 0000-0002-0098-8958

• GABAergic interneuron of the posterior substantia nigra pars reticulata date "2024-09-23T14:49:11Z"^^dateTime

• GABAergic interneuron of the posterior substantia nigra pars reticulata has_related_synonym "A GABAergic interneuron that has its soma in the posterior section of the substantia nigra pars reticulata. This GABAergic interneuron is characterised by the expression of the transcription factors Pax5, Ctip2 and Pou6f2 and it develops from the ventrolateral r1 neuroepithelium expresing NKX61."

  • database_cross_reference "PMID:36148148"

• GABAergic interneuron of the posterior substantia nigra pars reticulata label "GABAergic interneuron of the posterior substantia nigra pars reticulata"@en

• Class: GABAergic interneuron of the posterior substantia nigra pars reticulata

• GABAergic interneuron of the posterior substantia nigra pars reticulata SubClassOf expresses some paired box protein PAX-5

• GABAergic interneuron of the posterior substantia nigra pars reticulata SubClassOf neuron of the substantia nigra

PR_000004691 http://purl.obolibrary.org/obo/PR_000004691

Added

• Class: PR_000004691

PR_000013047 http://purl.obolibrary.org/obo/PR_000013047

Added

• Class: PR_000013047

PR_000014898 http://purl.obolibrary.org/obo/PR_000014898

Added

• Class: PR_000014898

[aleixpuigb]

PR terms are not being imported, i am investigating why and I will approve once it is solved (the terms look good!)

[aleixpuigb]

I could import the PR terms but please solve all conflictits arised from using the same CL IDs than terms added in #2569

[aleixpuigb]

I have used free IDs after the ones that are used in existing unmerged PR. Please, make sure that next time you add a term it is not using the IDs from these two terms.