Fixes #2586 NTR-enteroendocrine progenitor

[Caroline-99]

Added a new term with textual and logical defs, synonyms and references

[dosumis]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-09-23/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-09-23/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl

Ontology imports

Ontology annotations

intestinal enteroendocrine progenitor http://purl.obolibrary.org/obo/CL_4052006

Added

• intestinal enteroendocrine progenitor contributor 0009-0000-8480-9277

• intestinal enteroendocrine progenitor label "intestinal enteroendocrine progenitor"

• intestinal enteroendocrine progenitor date "2024-09-20T12:13:26Z"^^dateTime

• intestinal enteroendocrine progenitor comment "EEC progenitor is also present in other organisms ie. flies have EEC progenitors but don't have intestinal crypts and don't express the same markers - instead they are Dl+ Pros+."

  • database_cross_reference "PMID:25670791"

• intestinal enteroendocrine progenitor has_related_synonym "EEC Progenitor"

  • has_synonym_type abbreviation

  • database_cross_reference "PMID:31756561"

• intestinal enteroendocrine progenitor definition "An epithelial cell that is part of the crypt of Lieberkuhn, originating from intestinal stem cells and giving rise to enteroendocrine cells (EECs). In mouse and human, it expresses markers like Neurog3, and has the ability to proliferate and differentiate into various EEC subtypes. Its proliferative potential supports both crypt growth and cell proliferation, distinguishing it from fully differentiated EECs."

  • database_cross_reference "PMID:32531023"

  • database_cross_reference "PMID:35913117"

  • database_cross_reference "doi:/10.1038/s41467-021-27901-5"

  • database_cross_reference "PMID:31756561"

  • database_cross_reference "PMID:38260422"

• Class: intestinal enteroendocrine progenitor

• intestinal enteroendocrine progenitor SubClassOf develops from some intestinal crypt stem cell

• intestinal enteroendocrine progenitor SubClassOf progenitor cell

• intestinal enteroendocrine progenitor SubClassOf intestinal epithelial cell

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

intestinal enteroendocrine progenitor http://purl.obolibrary.org/obo/CL_4052006

Added

• intestinal enteroendocrine progenitor contributor 0009-0000-8480-9277

• intestinal enteroendocrine progenitor label "intestinal enteroendocrine progenitor"

• intestinal enteroendocrine progenitor date "2024-09-20T12:13:26Z"^^dateTime

• intestinal enteroendocrine progenitor comment "EEC progenitor is also present in other organisms ie. flies have EEC progenitors but don't have intestinal crypts and don't express the same markers - instead they are Dl+ Pros+."

  • database_cross_reference "PMID:25670791"

• intestinal enteroendocrine progenitor has_related_synonym "EEC Progenitor"

  • has_synonym_type abbreviation

  • database_cross_reference "PMID:31756561"

• intestinal enteroendocrine progenitor definition "An epithelial cell that is part of the crypt of Lieberkuhn, originating from intestinal stem cells and giving rise to enteroendocrine cells (EECs). In mouse and human, it expresses markers like Neurog3, and has the ability to proliferate and differentiate into various EEC subtypes. Its proliferative potential supports both crypt growth and cell proliferation, distinguishing it from fully differentiated EECs."

  • database_cross_reference "PMID:32531023"

  • database_cross_reference "PMID:35913117"

  • database_cross_reference "doi:/10.1038/s41467-021-27901-5"

  • database_cross_reference "PMID:31756561"

  • database_cross_reference "PMID:38260422"

• Class: intestinal enteroendocrine progenitor

• intestinal enteroendocrine progenitor SubClassOf develops from some intestinal crypt stem cell

• intestinal enteroendocrine progenitor SubClassOf progenitor cell

• intestinal enteroendocrine progenitor SubClassOf part of some epithelium of crypt of Lieberkuhn

• intestinal enteroendocrine progenitor SubClassOf intestinal epithelial cell

[Caroline-99]

#gogoeditdiff

[aleixpuigb]

Please, see inline comments.