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Merge pull request #2156 from obophenotype/2155-refresh-imports-09-2023
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Addresses #2155 Refresh imports 09-2023
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bvarner-ebi authored Sep 20, 2023
2 parents 07634dd + 7225a44 commit dfe591e
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Showing 2 changed files with 49 additions and 7 deletions.
52 changes: 47 additions & 5 deletions src/ontology/imports/merged_import.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/cl/imports/merged_import.owl>
<http://purl.obolibrary.org/obo/cl/releases/2023-09-06/imports/merged_import.owl>
Annotation(owl:versionInfo "2023-09-06")
<http://purl.obolibrary.org/obo/cl/releases/2023-09-20/imports/merged_import.owl>
Annotation(owl:versionInfo "2023-09-20")

Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))
Expand Down Expand Up @@ -13696,7 +13696,10 @@ Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8600002>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8600003>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8600004>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8600006>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8600010>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8600011>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8600012>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8600014>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8600017>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8600018>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000050>))
Expand Down Expand Up @@ -14388,7 +14391,7 @@ AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibra
AnnotationAssertion(<http://purl.org/dc/terms/created> <http://purl.obolibrary.org/obo/OMO_0003004> "2023-03-03"^^xsd:date)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OMO_0003004> "plural form")

# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002161> (never_in_taxon)
# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002161> (never in taxon)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000112> <http://purl.obolibrary.org/obo/RO_0002161> "tooth SubClassOf 'never in taxon' value 'Aves'")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:20973947") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/RO_0002161> "S never_in_taxon T iff: S SubClassOf in_taxon only not T.")
Expand Down Expand Up @@ -14726,9 +14729,8 @@ SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/uberon/core#NON_MAMMAL>

SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/uberon/core#PENDING_REVIEW> <http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty>)

# Annotation Property: <http://purl.obolibrary.org/obo/uberon/core#PLURAL> (plural term)
# Annotation Property: <http://purl.obolibrary.org/obo/uberon/core#PLURAL> (<http://purl.obolibrary.org/obo/uberon/core#PLURAL>)

AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/uberon/core#PLURAL> "plural term")
SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/uberon/core#PLURAL> <http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty>)

# Annotation Property: <http://purl.obolibrary.org/obo/uberon/core#SENSU> (<http://purl.obolibrary.org/obo/uberon/core#SENSU>)
Expand Down Expand Up @@ -113245,6 +113247,8 @@ SubClassOf(<http://purl.obolibrary.org/obo/IAO_0000409> <http://purl.obolibrary.
# Class: <http://purl.obolibrary.org/obo/NCBITaxon_1> (root)

AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/NCBITaxon_1> "GC_ID:1")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/NCBITaxon_1> "PMID:30365038")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/NCBITaxon_1> "PMID:32761142")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/NCBITaxon_1> "ncbi_taxonomy")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/ncbitaxon#synonym>) <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/NCBITaxon_1> "all")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/NCBITaxon_1> "NCBITaxon:1")
Expand Down Expand Up @@ -224936,6 +224940,32 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_8600006> "
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8600006> <http://purl.obolibrary.org/obo/UBERON_0002036>)
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8600006> <http://purl.obolibrary.org/obo/UBERON_8600004>)

# Class: <http://purl.obolibrary.org/obo/UBERON_8600010> (bronchial submucosal gland ciliated duct)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:30864819") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_8600010> "A ciliated duct part of a bronchial submucosal gland.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/RO_0002175> <http://purl.obolibrary.org/obo/UBERON_8600010> <http://purl.obolibrary.org/obo/NCBITaxon_9606>)
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/UBERON_8600010> <https://orcid.org/0000-0001-6677-8489>)
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/UBERON_8600010> <https://orcid.org/0000-0002-9185-3994>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/UBERON_8600010> "2023-05-02T08:07:56Z"^^xsd:dateTime)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/UBERON_8600010> "uberon")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/UBERON_8600010> "UBERON:8600010")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/UBERON_8600010> <http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_8600010> "bronchial submucosal gland ciliated duct")
EquivalentClasses(<http://purl.obolibrary.org/obo/UBERON_8600010> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/UBERON_8600014> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_8410043>)))

# Class: <http://purl.obolibrary.org/obo/UBERON_8600011> (tracheal submucosal gland ciliated duct)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:30864819") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_8600011> "A ciliated duct part of a tracheal submucosal gland.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/RO_0002175> <http://purl.obolibrary.org/obo/UBERON_8600011> <http://purl.obolibrary.org/obo/NCBITaxon_9606>)
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/UBERON_8600011> <https://orcid.org/0000-0001-6677-8489>)
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/UBERON_8600011> <https://orcid.org/0000-0002-9185-3994>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/UBERON_8600011> "2023-05-02T08:08:14Z"^^xsd:dateTime)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/UBERON_8600011> "uberon")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/UBERON_8600011> "UBERON:8600011")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/UBERON_8600011> <http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_8600011> "tracheal submucosal gland ciliated duct")
EquivalentClasses(<http://purl.obolibrary.org/obo/UBERON_8600011> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/UBERON_8600014> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0005203>)))

# Class: <http://purl.obolibrary.org/obo/UBERON_8600012> (submucosal gland acinus)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:17394068") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:17707699") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:25648514") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:30864819") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_8600012> "A spherical or tubular structure in a submucosal gland that produces and secretes mucus and other substances into the ducts leading to the surface epithelium.")
Expand All @@ -224948,6 +224978,18 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <htt
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_8600012> "submucosal gland acinus")
EquivalentClasses(<http://purl.obolibrary.org/obo/UBERON_8600012> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/UBERON_0009842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0011148>)))

# Class: <http://purl.obolibrary.org/obo/UBERON_8600014> (submucosal gland ciliated duct)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:17707699") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:30864819") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_8600014> "A ciliated tubular structure in a submucosal gland connecting the submucosal gland collecting duct with the surface epithelium.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/UBERON_8600014> <https://orcid.org/0000-0001-6677-8489>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/UBERON_8600014> "2023-05-02T08:09:14Z"^^xsd:dateTime)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/UBERON_8600014> "uberon")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/UBERON_8600014> "UBERON:8600014")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_8600014> "submucosal gland ciliated duct")
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8600014> <http://purl.obolibrary.org/obo/UBERON_0000058>)
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8600014> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0011148>))
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8600014> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CL_0000067>))

# Class: <http://purl.obolibrary.org/obo/UBERON_8600017> (bronchopulmonary segment)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "FMA:7312") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:18271171") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:33620799") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "doi:10.1016/j.mpaic.2008.09.022") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_8600017> "A discrete anatomical unit of the lung that is composed of a segmental bronchus and the lung tissue supplied by that bronchus. A bronchopulmonary segment exhibits a pyramidal shape, with its apex pointing towards the center of the lung and its base toward the pleural surface.")
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4 changes: 2 additions & 2 deletions src/patterns/definitions.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/cl/patterns/definitions.owl>
<http://purl.obolibrary.org/obo/cl/releases/2023-09-06/patterns/definitions.owl>
Annotation(owl:versionInfo "2023-09-06")
<http://purl.obolibrary.org/obo/cl/releases/2023-09-20/patterns/definitions.owl>
Annotation(owl:versionInfo "2023-09-20")



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