Merge pull request #1836 from obophenotype/#1835_correct_brush_cell_o…

…f_bronchus Fixes #1835 logical definition child terms of 'brush cell of tracheobronchial tree'
obophenotype · Feb 15, 2023 · de1e98d · de1e98d
2 parents 4b8dd16 + 759688c
commit de1e98d
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diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl
@@ -3023,6 +3023,10 @@ Declaration(Class(obo:UBERON_8400008))
 Declaration(Class(obo:UBERON_8410041))
 Declaration(Class(obo:UBERON_8410042))
 Declaration(Class(obo:UBERON_8410043))
+Declaration(Class(obo:UBERON_8600000))
+Declaration(Class(obo:UBERON_8600001))
+Declaration(Class(obo:UBERON_8600002))
+Declaration(Class(obo:UBERON_8600003))
 Declaration(ObjectProperty(obo:BFO_0000051))
 Declaration(ObjectProperty(obo:RO_0000053))
 Declaration(ObjectProperty(obo:RO_0001025))
@@ -15538,7 +15542,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002205 "2010-09-02T02:38:34Z"
 AnnotationAssertion(oboInOwl:hasAlternativeId obo:CL_0002205 "CL:1000386"^^xsd:string)
 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002205 "FMA:263220"^^xsd:string)
 AnnotationAssertion(rdfs:label obo:CL_0002205 "brush cell of lobular bronchiole"^^xsd:string)
-EquivalentClasses(obo:CL_0002205 ObjectIntersectionOf(obo:CL_0002075 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002051)))
+EquivalentClasses(obo:CL_0002205 ObjectIntersectionOf(obo:CL_0002204 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8600001)))
 
 # Class: obo:CL_0002206 (brush cell of terminal bronchiole)
 
@@ -15548,9 +15552,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002206 "2010-09-02T02:38:36Z"
 AnnotationAssertion(oboInOwl:hasAlternativeId obo:CL_0002206 "CL:1000390"^^xsd:string)
 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002206 "FMA:263228"^^xsd:string)
 AnnotationAssertion(rdfs:label obo:CL_0002206 "brush cell of terminal bronchiole"^^xsd:string)
-EquivalentClasses(obo:CL_0002206 ObjectIntersectionOf(obo:CL_0002075 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001958)))
-SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002206 obo:CL_0000082)
-SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002206 obo:CL_0002075)
+EquivalentClasses(obo:CL_0002206 ObjectIntersectionOf(obo:CL_0002204 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001958)))
 
 # Class: obo:CL_0002207 (brush cell of trachea)
 
@@ -15572,9 +15574,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002208 "2010-09-02T02:38:42Z"
 AnnotationAssertion(oboInOwl:hasAlternativeId obo:CL_0002208 "CL:1000389"^^xsd:string)
 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002208 "FMA:263226"^^xsd:string)
 AnnotationAssertion(rdfs:label obo:CL_0002208 "brush cell of bronchus"^^xsd:string)
-EquivalentClasses(obo:CL_0002208 ObjectIntersectionOf(obo:CL_0002075 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002031)))
-SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002208 obo:CL_0002075)
-SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002208 obo:CL_0002328)
+EquivalentClasses(obo:CL_0002208 ObjectIntersectionOf(obo:CL_0002204 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002031)))
 
 # Class: obo:CL_0002209 (intermediate epitheliocyte)
 
@@ -25169,7 +25169,7 @@ EquivalentClasses(obo:CL_1000332 ObjectIntersectionOf(obo:CL_0000313 ObjectSomeV
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm"^^xsd:string) obo:IAO_0000115 obo:CL_1000333 "A serous secreting cell that is part of the epithelium of bronchiole."^^xsd:string)
 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000333 "FMA:263084"^^xsd:string)
 AnnotationAssertion(rdfs:label obo:CL_1000333 "serous cell of epithelium of lobular bronchiole"^^xsd:string)
-EquivalentClasses(obo:CL_1000333 ObjectIntersectionOf(obo:CL_0000313 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002051)))
+EquivalentClasses(obo:CL_1000333 ObjectIntersectionOf(obo:CL_0000313 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8600001)))
 
 # Class: obo:CL_1000334 (enterocyte of epithelium of small intestine)
 
@@ -25320,7 +25320,7 @@ SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000351 obo:CL_0002633
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm"^^xsd:string) obo:IAO_0000115 obo:CL_1000352 "A basal cell that is part of the epithelium of bronchiole."^^xsd:string)
 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000352 "FMA:263126"^^xsd:string)
 AnnotationAssertion(rdfs:label obo:CL_1000352 "basal cell of epithelium of lobular bronchiole"^^xsd:string)
-EquivalentClasses(obo:CL_1000352 ObjectIntersectionOf(obo:CL_0002633 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002051)))
+EquivalentClasses(obo:CL_1000352 ObjectIntersectionOf(obo:CL_0002633 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8600001)))
 SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000352 obo:CL_0002633)
 
 # Class: obo:CL_1000353 (microfold cell of epithelium of small intestine)