Merge pull request #2125 from obophenotype/release-2023-08-24

CL release 2023-08-24
obophenotype · Aug 24, 2023 · b57cb4e · b57cb4e
2 parents 12abd94 + 10cdffd
commit b57cb4e
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Showing 29 changed files with 21,636 additions and 16,315 deletions.
diff --git a/cl-base.owl b/cl-base.owl
diff --git a/cl.obo b/cl.obo
diff --git a/patterns/definitions.owl b/patterns/definitions.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/cl/patterns/definitions.owl>
-<http://purl.obolibrary.org/obo/cl/releases/2023-07-19/patterns/definitions.owl>
-Annotation(owl:versionInfo "2023-07-19")
+<http://purl.obolibrary.org/obo/cl/releases/2023-08-23/patterns/definitions.owl>
+Annotation(owl:versionInfo "2023-08-23")
 
 
 

diff --git a/src/ontology/diffs/cl-diff.md b/src/ontology/diffs/cl-diff.md
diff --git a/src/ontology/reports/cl-edit.owl-obo-report.tsv b/src/ontology/reports/cl-edit.owl-obo-report.tsv
@@ -30,7 +30,6 @@ WARN	missing_definition	CL:0000146	IAO:0000115
 WARN	missing_definition	CL:0000149	IAO:0000115	
 WARN	missing_definition	CL:0000154	IAO:0000115	
 WARN	missing_definition	CL:0000159	IAO:0000115	
-WARN	missing_definition	CL:0000161	IAO:0000115	
 WARN	missing_definition	CL:0000167	IAO:0000115	
 WARN	missing_definition	CL:0000168	IAO:0000115	
 WARN	missing_definition	CL:0000172	IAO:0000115	
@@ -189,7 +188,6 @@ WARN	missing_definition	CL:1000143	IAO:0000115
 WARN	missing_definition	CL:1000182	IAO:0000115	
 WARN	missing_definition	CL:1000217	IAO:0000115	
 WARN	missing_definition	CL:1000222	IAO:0000115	
-WARN	missing_definition	CL:1000223	IAO:0000115	
 WARN	missing_definition	CL:1000236	IAO:0000115	
 WARN	missing_definition	CL:1000239	IAO:0000115	
 WARN	missing_definition	CL:1000245	IAO:0000115	
@@ -297,6 +295,7 @@ WARN	missing_definition	CL:4023057	IAO:0000115
 WARN	missing_definition	CL:4030044	IAO:0000115	
 WARN	missing_definition	CL:4030045	IAO:0000115	
 WARN	missing_definition	CL:4030046	IAO:0000115	
+WARN	missing_definition	IAO:0000028	IAO:0000115	
 WARN	missing_definition	IAO:0000115	IAO:0000115	
 WARN	missing_definition	IAO:0000424	IAO:0000115	
 WARN	missing_definition	IAO:0000700	IAO:0000115	
@@ -449,6 +448,7 @@ INFO	missing_superclass	CL:0002673	rdfs:subClassOf
 INFO	missing_superclass	CL:0003001	rdfs:subClassOf	
 INFO	missing_superclass	CL:0004246	rdfs:subClassOf	
 INFO	missing_superclass	CL:0004247	rdfs:subClassOf	
+INFO	missing_superclass	CL:0004250	rdfs:subClassOf	
 INFO	missing_superclass	CL:0005018	rdfs:subClassOf	
 INFO	missing_superclass	CL:0005023	rdfs:subClassOf	
 INFO	missing_superclass	CL:0008003	rdfs:subClassOf	
@@ -576,7 +576,6 @@ INFO	missing_superclass	CL:1000123	rdfs:subClassOf
 INFO	missing_superclass	CL:1000143	rdfs:subClassOf	
 INFO	missing_superclass	CL:1000217	rdfs:subClassOf	
 INFO	missing_superclass	CL:1000222	rdfs:subClassOf	
-INFO	missing_superclass	CL:1000223	rdfs:subClassOf	
 INFO	missing_superclass	CL:1000236	rdfs:subClassOf	
 INFO	missing_superclass	CL:1000239	rdfs:subClassOf	
 INFO	missing_superclass	CL:1000245	rdfs:subClassOf	
@@ -715,7 +714,6 @@ INFO	missing_superclass	CL:4023068	rdfs:subClassOf
 INFO	missing_superclass	CL:4023069	rdfs:subClassOf	
 INFO	missing_superclass	CL:4023070	rdfs:subClassOf	
 INFO	missing_superclass	CL:4023072	rdfs:subClassOf	
-INFO	missing_superclass	CL:4023073	rdfs:subClassOf	
 INFO	missing_superclass	CL:4023074	rdfs:subClassOf	
 INFO	missing_superclass	CL:4023076	rdfs:subClassOf	
 INFO	missing_superclass	CL:4023077	rdfs:subClassOf	
@@ -785,5 +783,10 @@ INFO	missing_superclass	CL:4033022	rdfs:subClassOf
 INFO	missing_superclass	CL:4033025	rdfs:subClassOf	
 INFO	missing_superclass	CL:4033026	rdfs:subClassOf	
 INFO	missing_superclass	CL:4033040	rdfs:subClassOf	
+INFO	missing_superclass	CL:4033046	rdfs:subClassOf	
+INFO	missing_superclass	CL:4033047	rdfs:subClassOf	
 INFO	missing_superclass	CL:4033049	rdfs:subClassOf	
 INFO	missing_superclass	CL:4033050	rdfs:subClassOf	
+INFO	missing_superclass	CL:4033051	rdfs:subClassOf	
+INFO	missing_superclass	CL:4033052	rdfs:subClassOf	
+INFO	missing_superclass	CL:4033054	rdfs:subClassOf	
diff --git a/src/ontology/subsets/blood_and_immune_upper_slim.json b/src/ontology/subsets/blood_and_immune_upper_slim.json
diff --git a/src/ontology/subsets/blood_and_immune_upper_slim.obo b/src/ontology/subsets/blood_and_immune_upper_slim.obo
diff --git a/src/ontology/subsets/blood_and_immune_upper_slim.owl b/src/ontology/subsets/blood_and_immune_upper_slim.owl
diff --git a/src/ontology/subsets/blood_and_immune_upper_slim.tsv b/src/ontology/subsets/blood_and_immune_upper_slim.tsv
diff --git a/src/ontology/subsets/eye_upper_slim.json b/src/ontology/subsets/eye_upper_slim.json
diff --git a/src/ontology/subsets/eye_upper_slim.obo b/src/ontology/subsets/eye_upper_slim.obo
diff --git a/src/ontology/subsets/eye_upper_slim.owl b/src/ontology/subsets/eye_upper_slim.owl
diff --git a/src/ontology/subsets/eye_upper_slim.tsv b/src/ontology/subsets/eye_upper_slim.tsv