release 2023-07-20

obophenotype · Jul 20, 2023 · 21ed80b · 21ed80b
1 parent 86a960b
commit 21ed80b
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Showing 29 changed files with 18,174 additions and 13,046 deletions.
diff --git a/cl-base.owl b/cl-base.owl
diff --git a/cl.obo b/cl.obo
diff --git a/patterns/definitions.owl b/patterns/definitions.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/cl/patterns/definitions.owl>
-<http://purl.obolibrary.org/obo/cl/releases/2023-06-21/patterns/definitions.owl>
-Annotation(owl:versionInfo "2023-06-21")
+<http://purl.obolibrary.org/obo/cl/releases/2023-07-19/patterns/definitions.owl>
+Annotation(owl:versionInfo "2023-07-19")
 
 
 

diff --git a/src/ontology/diffs/cl-diff.md b/src/ontology/diffs/cl-diff.md
diff --git a/src/ontology/reports/cl-edit.owl-obo-report.tsv b/src/ontology/reports/cl-edit.owl-obo-report.tsv
@@ -112,13 +112,7 @@ WARN	missing_definition	CL:0000490	IAO:0000115
 WARN	missing_definition	CL:0000520	IAO:0000115	
 WARN	missing_definition	CL:0000521	IAO:0000115	
 WARN	missing_definition	CL:0000529	IAO:0000115	
-WARN	missing_definition	CL:0000530	IAO:0000115	
-WARN	missing_definition	CL:0000531	IAO:0000115	
 WARN	missing_definition	CL:0000532	IAO:0000115	
-WARN	missing_definition	CL:0000533	IAO:0000115	
-WARN	missing_definition	CL:0000534	IAO:0000115	
-WARN	missing_definition	CL:0000535	IAO:0000115	
-WARN	missing_definition	CL:0000536	IAO:0000115	
 WARN	missing_definition	CL:0000544	IAO:0000115	
 WARN	missing_definition	CL:0000551	IAO:0000115	
 WARN	missing_definition	CL:0000555	IAO:0000115	
@@ -326,6 +320,7 @@ WARN	missing_definition	oboInOwl:shorthand	IAO:0000115
 WARN	missing_obsolete_label	CL:0000736	rdfs:label	embryonic gland hemocyte
 WARN	missing_synonymtype_declaration	obo:caloha-reqs-vetted#PLURAL	rdfs:subPropertyOf	
 WARN	missing_synonymtype_declaration	obo:cl#PLURAL	rdfs:subPropertyOf	
+WARN	missing_synonymtype_declaration	obo:uberon/core#MISSPELLING	rdfs:subPropertyOf	
 WARN	missing_synonymtype_declaration	obo:uberon/core#PLURAL	rdfs:subPropertyOf	
 INFO	lowercase_definition	CL:4023080	IAO:0000115	a L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex that has stellate pyramidal morphology.
 INFO	lowercase_definition	CL:4023081	IAO:0000115	a L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex that has inverted pyramidal morphology.
@@ -524,7 +519,6 @@ INFO	missing_superclass	CL:0009065	rdfs:subClassOf
 INFO	missing_superclass	CL:0009066	rdfs:subClassOf	
 INFO	missing_superclass	CL:0009080	rdfs:subClassOf	
 INFO	missing_superclass	CL:0009084	rdfs:subClassOf	
-INFO	missing_superclass	CL:0009086	rdfs:subClassOf	
 INFO	missing_superclass	CL:0009089	rdfs:subClassOf	
 INFO	missing_superclass	CL:0009092	rdfs:subClassOf	
 INFO	missing_superclass	CL:0009093	rdfs:subClassOf	
@@ -785,7 +779,6 @@ INFO	missing_superclass	CL:4033011	rdfs:subClassOf
 INFO	missing_superclass	CL:4033012	rdfs:subClassOf	
 INFO	missing_superclass	CL:4033013	rdfs:subClassOf	
 INFO	missing_superclass	CL:4033015	rdfs:subClassOf	
-INFO	missing_superclass	CL:4033017	rdfs:subClassOf	
 INFO	missing_superclass	CL:4033020	rdfs:subClassOf	
 INFO	missing_superclass	CL:4033021	rdfs:subClassOf	
 INFO	missing_superclass	CL:4033022	rdfs:subClassOf	

diff --git a/src/ontology/subsets/blood_and_immune_upper_slim.json b/src/ontology/subsets/blood_and_immune_upper_slim.json
diff --git a/src/ontology/subsets/blood_and_immune_upper_slim.obo b/src/ontology/subsets/blood_and_immune_upper_slim.obo
diff --git a/src/ontology/subsets/blood_and_immune_upper_slim.owl b/src/ontology/subsets/blood_and_immune_upper_slim.owl
diff --git a/src/ontology/subsets/blood_and_immune_upper_slim.tsv b/src/ontology/subsets/blood_and_immune_upper_slim.tsv
diff --git a/src/ontology/subsets/eye_upper_slim.json b/src/ontology/subsets/eye_upper_slim.json
diff --git a/src/ontology/subsets/eye_upper_slim.obo b/src/ontology/subsets/eye_upper_slim.obo
diff --git a/src/ontology/subsets/eye_upper_slim.owl b/src/ontology/subsets/eye_upper_slim.owl
diff --git a/src/ontology/subsets/eye_upper_slim.tsv b/src/ontology/subsets/eye_upper_slim.tsv
diff --git a/src/ontology/subsets/general_cell_types_upper_slim.json b/src/ontology/subsets/general_cell_types_upper_slim.json
diff --git a/src/ontology/subsets/general_cell_types_upper_slim.obo b/src/ontology/subsets/general_cell_types_upper_slim.obo
diff --git a/src/ontology/subsets/general_cell_types_upper_slim.owl b/src/ontology/subsets/general_cell_types_upper_slim.owl
diff --git a/src/ontology/subsets/general_cell_types_upper_slim.tsv b/src/ontology/subsets/general_cell_types_upper_slim.tsv
diff --git a/subsets/blood_and_immune_upper_slim.json b/subsets/blood_and_immune_upper_slim.json
diff --git a/subsets/blood_and_immune_upper_slim.obo b/subsets/blood_and_immune_upper_slim.obo
diff --git a/subsets/blood_and_immune_upper_slim.owl b/subsets/blood_and_immune_upper_slim.owl
diff --git a/subsets/blood_and_immune_upper_slim.tsv b/subsets/blood_and_immune_upper_slim.tsv
diff --git a/subsets/eye_upper_slim.json b/subsets/eye_upper_slim.json
diff --git a/subsets/eye_upper_slim.obo b/subsets/eye_upper_slim.obo
diff --git a/subsets/eye_upper_slim.owl b/subsets/eye_upper_slim.owl
diff --git a/subsets/eye_upper_slim.tsv b/subsets/eye_upper_slim.tsv
diff --git a/subsets/general_cell_types_upper_slim.json b/subsets/general_cell_types_upper_slim.json
diff --git a/subsets/general_cell_types_upper_slim.obo b/subsets/general_cell_types_upper_slim.obo
diff --git a/subsets/general_cell_types_upper_slim.owl b/subsets/general_cell_types_upper_slim.owl
diff --git a/subsets/general_cell_types_upper_slim.tsv b/subsets/general_cell_types_upper_slim.tsv