Fifth beta release (#60)

README.md

@@ -10,12 +10,11 @@ More information about BioMedICUS can be found on our [website](https://nlpie.gi
 
 - [Python 3.5 or later](https://www.python.org/)
 - [Java JDK 8.0 or later](https://adoptopenjdk.net/index.html). Note, you will need to have the ["java" command on the your "$PATH"](https://www.java.com/en/download/help/path.xml).
+- [PyTorch](https://pytorch.org/get-started/locally/)
 
 ## Installation
 
-```bash
-pip install biomedicus\[torch]
-```
+[Installation instructions are available on our website](https://nlpie.github.io/biomedicus/installation).
 
 ## Deploying the default BioMedICUS Pipeline
 

java/build.gradle

@@ -69,7 +69,7 @@ dependencies {
 
     implementation group: 'javax.annotation', name: 'javax.annotation-api', version: '1.3.2'
     implementation group: 'org.slf4j', name: 'slf4j-api', version: slf4jVersion
-    implementation group: 'edu.umn.nlpie', name: 'mtap', version: '[0.4.0, )'
+    implementation group: 'edu.umn.nlpie', name: 'mtap', version: '[0.5.0, )'
     implementation group: 'edu.umn.biomedicus', name: 'biomedicus-tokenizer', version: '0.0.3'
     implementation group: 'org.rocksdb', name: 'rocksdbjni', version: '6.0.1'
     implementation group: 'org.apache.commons', name: 'commons-math3', version: '3.6.1'

setup.py

@@ -99,7 +99,7 @@ def run_tests(self):
         'biomedicus': ['defaultConfig.yml', 'biomedicus-all.jar', 'negation/negex_triggers.txt']
     },
     install_requires=[
-        'mtap>=0.4.0',
+        'mtap>=0.5.0',
         'numpy',
         'pyyaml',
         'regex',