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Dev #295

Merged
merged 20 commits into from
Mar 22, 2024
Merged

Dev #295

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8aa264e
resolved https://github.com/neuronets/nobrainer/issues/285
hvgazula Mar 8, 2024
9d55484
Resolved https://github.com/neuronets/nobrainer/issues/283
hvgazula Mar 10, 2024
cff8368
add tests for u-net models and resolved https://github.com/neuronets/…
hvgazula Mar 11, 2024
c67bd9e
resolved https://github.com/neuronets/nobrainer/issues/278
hvgazula Mar 12, 2024
a78aec0
Merge branch 'hvgazula/issue283' into dev
hvgazula Mar 12, 2024
38df06d
Merge branch 'hvgazula/issue285' into dev
hvgazula Mar 12, 2024
eb6d11e
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 12, 2024
b3e2a8a
resolved https://github.com/neuronets/nobrainer/issues/289
hvgazula Mar 12, 2024
5a3d807
resolved https://github.com/neuronets/nobrainer/issues/296
hvgazula Mar 18, 2024
7d00dc1
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 18, 2024
ab341ee
resolved https://github.com/neuronets/nobrainer/issues/297
hvgazula Mar 18, 2024
1171229
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 18, 2024
87278e2
restricting tf to 2.15.1
hvgazula Mar 19, 2024
29db911
fix formatting issues
hvgazula Mar 19, 2024
80257e6
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 19, 2024
91f74e4
Merge branch 'master' into dev
satra Mar 19, 2024
4d67696
skip testing big models
hvgazula Mar 19, 2024
da5e0bc
resolved https://github.com/neuronets/nobrainer/issues/302
hvgazula Mar 21, 2024
2caa2e6
resolved https://github.com/neuronets/nobrainer/issues/303
hvgazula Mar 22, 2024
d271fc9
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 22, 2024
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8 changes: 7 additions & 1 deletion nobrainer/processing/segmentation.py
Original file line number Diff line number Diff line change
@@ -39,6 +39,7 @@ def fit(
opt_args=None,
loss=losses.dice,
metrics=metrics.dice,
callbacks=None
):
"""Train a segmentation model"""
# TODO: check validity of datasets
@@ -82,7 +83,12 @@ def _compile():
_compile()
self.model_.summary()

callbacks = []
if callbacks is not None and not isinstance(callbacks, list):
raise AttributeError('Callbacks must be either of type list or None')

if callbacks is None:
callbacks = []

if self.checkpoint_tracker:
callbacks.append(self.checkpoint_tracker)
self.model_.fit(