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problem reproducing data #11

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smith6jt-cop opened this issue Feb 22, 2024 · 0 comments
Open

problem reproducing data #11

smith6jt-cop opened this issue Feb 22, 2024 · 0 comments

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@smith6jt-cop
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Enter the absolute path you would like to download the images to:
/home/smith6jt
Downloading...
Which imaging modality?
Enter CODEX or IMC or all
all
--2024-02-21 22:36:42-- https://g-d00e7b.09193a.5898.dn.glob.us/f1da42ceecf7aee4022a656c45566c18/20190517_SB_mc1/channelnames_report.csv
Resolving g-d00e7b.09193a.5898.dn.glob.us (g-d00e7b.09193a.5898.dn.glob.us)... 192.231.243.138
Connecting to g-d00e7b.09193a.5898.dn.glob.us (g-d00e7b.09193a.5898.dn.glob.us)|192.231.243.138|:443... connected.
HTTP request sent, awaiting response... 404 Not Found
2024-02-21 22:36:43 ERROR 404: Not Found.

Traceback (most recent call last):
File "/home/smith6jt/CellSegmentationEvaluator/full_pipeline/generate_config.py", line 29, in
get_HuBMAP_data(download_modality, img_path + '/HuBMAP_images')
File "/home/smith6jt/CellSegmentationEvaluator/full_pipeline/pipeline/data/download_HuBMAP_data.py", line 165, in get_HuBMAP_data
get_CODEX_data(output_dir + '/CODEX')
File "/home/smith6jt/CellSegmentationEvaluator/full_pipeline/pipeline/data/download_HuBMAP_data.py", line 102, in get_CODEX_data
channel_info = pd.read_csv(glob.glob(join(save_dir, '*.csv'))[0], header=None).iloc[:, 0].values.tolist()
IndexError: list index out of range

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