ENH: Version 5.0.0 of BRAINSTools

This version is now only compatible with C++11 This version is now only compatible with Python 3
mseng10 · Apr 16, 2018 · 83805da · 83805da
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diff --git a/ARCHIVE/BRAINSContinuousClass/BRAINSContinuousClass.xml b/ARCHIVE/BRAINSContinuousClass/BRAINSContinuousClass.xml
@@ -4,7 +4,7 @@
   <title> Predict Lesions</title>
 
   <description>Creates a continuous classified image.</description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http:://www.na-mic.org/</documentation-url>
   <license>NEED TO ADD</license>
   <contributor>This tool was developed by Mark Scully.</contributor>

diff --git a/ARCHIVE/BRAINSRefacer/BRAINSRefacer.xml b/ARCHIVE/BRAINSRefacer/BRAINSRefacer.xml
@@ -8,7 +8,7 @@
   <acknowledgements>
     <![CDATA[Hans Johnson(1,2,3); Alexander Leinoff(3); Yue Pan(3); Wei Shao(3); Jeffrey Obadal(3)  1=University of Iowa Department of Psychiatry, 2=University of Iowa Department of Biomedical Engineering, 3=University of Iowa Department of Electrical and Computer Engineering]]>
   </acknowledgements>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url></documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <parameters>

diff --git a/ARCHIVE/BRAINSRefacer/TestSuite/BRAINSRefacerBrainDataTest.xml b/ARCHIVE/BRAINSRefacer/TestSuite/BRAINSRefacerBrainDataTest.xml
@@ -5,7 +5,7 @@
     </title>
   <description>
     </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>none</documentation-url>
   <license>none</license>
   <contributor>

diff --git a/ARCHIVE/BRAINSRefacer/TestSuite/BRAINSRefacerCheckDeformationAreaLabelMap.xml b/ARCHIVE/BRAINSRefacer/TestSuite/BRAINSRefacerCheckDeformationAreaLabelMap.xml
@@ -4,7 +4,7 @@
   <title>    </title>
   <description>
     </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>none</documentation-url>
   <license>none</license>
   <contributor>

diff --git a/ARCHIVE/BRAINSRefacer/TestSuite/BRAINSRefacerCheckDeformationAreaLandmarks.xml b/ARCHIVE/BRAINSRefacer/TestSuite/BRAINSRefacerCheckDeformationAreaLandmarks.xml
@@ -4,7 +4,7 @@
   <title>    </title>
   <description>
     </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>none</documentation-url>
   <license>none</license>
   <contributor>

diff --git a/ARCHIVE/BRAINSRefacer/TestSuite/BRAINSRefacerCheckPixelType.xml b/ARCHIVE/BRAINSRefacer/TestSuite/BRAINSRefacerCheckPixelType.xml
@@ -4,7 +4,7 @@
   <title>    </title>
   <description>
   </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>none</documentation-url>
   <license>none</license>
   <contributor>

diff --git a/ARCHIVE/BRAINSTalairach/BRAINSTalairach.xml b/ARCHIVE/BRAINSTalairach/BRAINSTalairach.xml
@@ -8,7 +8,7 @@
   </title>
   <description>
   This program creates a VTK structured grid defining the Talairach coordinate system based on four points: AC, PC, IRP, and SLA. The resulting structred grid can be written as either a classic VTK file or the new VTK XML file format. Two representations of the resulting grid can be written. The first is a bounding box representation that also contains the location of the AC and PC points. The second representation is the full Talairach grid representation that includes the additional rows of boxes added to the inferior allowing full coverage of the cerebellum. </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http://www.nitrc.org/plugins/mwiki/index.php/brains:BRAINSTalairach</documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>

diff --git a/ARCHIVE/BRAINSTalairach/BRAINSTalairachMask.xml b/ARCHIVE/BRAINSTalairach/BRAINSTalairachMask.xml
@@ -8,7 +8,7 @@
   </title>
   <description>
   This program creates a binary image representing the specified Talairach region. The input is an example image to define the physical space for the resulting image, the Talairach grid representation in VTK format, and the file containing the Talairach box definitions to be generated. These can be combined in BRAINS to create a label map using the procedure Brains::WorkupUtils::CreateLabelMapFromBinaryImages. </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http://www.nitrc.org/plugins/mwiki/index.php/brains:BRAINSTalairachMask</documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>

diff --git a/ARCHIVE/DicomSignature/DicomSignature.xml b/ARCHIVE/DicomSignature/DicomSignature.xml
@@ -6,7 +6,7 @@
   <description>
    This program creates a unique signature from a dicom image.
   </description>
-  <version>0.0.5</version>
+  <version>5.0.0</version>
   <documentation-url></documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt </license>
   <contributor>This tool was developed by Hans Johnson.</contributor>

diff --git a/ARCHIVE/ICCDEF/AverageBrainGenerator.xml b/ARCHIVE/ICCDEF/AverageBrainGenerator.xml
@@ -6,7 +6,7 @@
   <description>
 This programs creates synthesized average brain.
   </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http:://mri.radiology.uiowa.edu/mriwiki</documentation-url>
   <license>NEED TO ADD</license>
   <contributor>This tool was developed by Yongqiang Zhao.</contributor>

diff --git a/ARCHIVE/ICCDEF/CreateMask.xml b/ARCHIVE/ICCDEF/CreateMask.xml
@@ -6,7 +6,7 @@
   <description>
 This programs creates synthesized average brain.
   </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http:://mri.radiology.uiowa.edu/mriwiki</documentation-url>
   <license>NEED TO ADD</license>
   <contributor>This tool was developed by Yongqiang Zhao.</contributor>

diff --git a/ARCHIVE/ICCDEF/iccdefRegistration_New.xml b/ARCHIVE/ICCDEF/iccdefRegistration_New.xml
@@ -6,7 +6,7 @@
   <description>
     This program finds a deformation field to warp a moving image onto a fixed image.  The images must be of the same signal kind, and contain an image of the same kind of object.  This program uses the Thirion Demons warp software in ITK, the Insight Toolkit.
   </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url></documentation-url>
   <license>NEED TO ADD</license>
   <contributor>This tool was developed by Hans Johnson and Greg Harris.</contributor>

diff --git a/BRAINSABC/brainseg/GenerateLabelMapFromProbabilityMap.xml b/BRAINSABC/brainseg/GenerateLabelMapFromProbabilityMap.xml
@@ -5,7 +5,7 @@
   <description>
     Given a list of probability maps for labels, create a discrete label map where only the highest probability region is used for the labeling.
   </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url></documentation-url>
   <license></license>
   <contributor>University of Iowa Department of Psychiatry, http:://www.psychiatry.uiowa.edu

diff --git a/BRAINSABC/brainseg/GeneratePurePlugMask.xml b/BRAINSABC/brainseg/GeneratePurePlugMask.xml
@@ -5,7 +5,7 @@
   <description>
     This program gets several modality image files and returns a binary mask that defines the pure plugs.
   </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url> </documentation-url>
   <license> </license>
   <contributor>Ali Ghayoor</contributor>

diff --git a/BRAINSCommonLib/TestSuite/FindCenterOfBrain.xml b/BRAINSCommonLib/TestSuite/FindCenterOfBrain.xml
@@ -7,7 +7,7 @@
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>Hans J. Johnson, hans-johnson -at- uiowa.edu, http://wwww.psychiatry.uiowa.edu</contributor>
   <acknowledgements>Hans Johnson(1,3,4); Kent Williams(1);  (1=University of Iowa Department of Psychiatry, 3=University of Iowa Department of Biomedical Engineering, 4=University of Iowa Department of Electrical and Computer Engineering</acknowledgements>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <parameters advanced="false">
     <label>Required Input Parameters</label>
     <image>

diff --git a/BRAINSConstellationDetector/TestSuite/LandmarksCompare.xml b/BRAINSConstellationDetector/TestSuite/LandmarksCompare.xml
@@ -5,7 +5,7 @@
   <description>
     Compares two .fcsv or .wts text files and verifies that they are identicle.  Used for testing landmarks files.
   </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url> </documentation-url>
   <license> </license>
   <contributor>Ali Ghayoor</contributor>

diff --git a/BRAINSConstellationDetector/gui/BRAINSConstellationDetectorGUI.xml b/BRAINSConstellationDetector/gui/BRAINSConstellationDetectorGUI.xml
@@ -6,7 +6,7 @@
       This program provides the user with a GUI tool to view/manipulate landmarks for an input volume.
     </description>
 
-    <version>4.8.0</version>
+    <version>5.0.0</version>
     <documentation-url>http://www.nitrc.org/projects/brainscdetector/</documentation-url>
     <parameters>
         <image>

diff --git a/BRAINSConstellationDetector/landmarkStatistics/GenerateAverageLmkFile.xml b/BRAINSConstellationDetector/landmarkStatistics/GenerateAverageLmkFile.xml
@@ -5,7 +5,7 @@
   <description>
     This program gets several fcsv file each one contains several landmarks with the same name but slightly different coordinates. For EACH landmark we compute the average coordination.
   </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url> </documentation-url>
   <license> </license>
   <contributor>Ali Ghayoor</contributor>

diff --git a/BRAINSConstellationDetector/src/BRAINSClipInferior.xml b/BRAINSConstellationDetector/src/BRAINSClipInferior.xml
@@ -5,7 +5,7 @@
     <description>This program will read the inputVolume as a short int image, write the BackgroundFillValue everywhere inferior to the lower bound, and write the resulting clipped short int image in the outputVolume.
     </description>
 
-    <version>4.8.0</version>
+    <version>5.0.0</version>
     <parameters>
         <image>
             <name>inputVolume</name>

diff --git a/BRAINSConstellationDetector/src/BRAINSConstellationDetector.xml b/BRAINSConstellationDetector/src/BRAINSConstellationDetector.xml
@@ -7,7 +7,7 @@
   </description>
   <contributor>Hans J. Johnson (hans-johnson -at- uiowa.edu), Ali Ghayoor</contributor>
   <acknowledgements><![CDATA[Hans Johnson(1,2,3); Ali Ghayoor(3); Wei Lu(3) 1=University of Iowa Department of Psychiatry, 2=University of Iowa Department of Biomedical Engineering, 3=University of Iowa Department of Electrical and Computer Engineering]]>  </acknowledgements>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http://www.nitrc.org/projects/brainscdetector/</documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
 

diff --git a/BRAINSConstellationDetector/src/BRAINSConstellationLandmarksTransform.xml b/BRAINSConstellationDetector/src/BRAINSConstellationLandmarksTransform.xml
@@ -5,7 +5,7 @@
   <description>
   This program converts the original landmark file to the target landmark file using the input transform.
   </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url> </documentation-url>
   <license> </license>
   <contributor>Ali Ghayoor</contributor>

diff --git a/BRAINSConstellationDetector/src/BRAINSEyeDetector.xml b/BRAINSConstellationDetector/src/BRAINSEyeDetector.xml
@@ -5,7 +5,7 @@
   <description>
   </description>
 
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http://www.nitrc.org/projects/brainscdetector/</documentation-url>
   <parameters>
     <integer>

diff --git a/BRAINSConstellationDetector/src/BRAINSLinearModelerEPCA.xml b/BRAINSConstellationDetector/src/BRAINSLinearModelerEPCA.xml
@@ -7,7 +7,7 @@
 
     </description>
 
-    <version>4.8.0</version>
+    <version>5.0.0</version>
     <documentation-url>http://www.nitrc.org/projects/brainscdetector/</documentation-url>
     <parameters>
         <file fileExtensions=".lst">

diff --git a/BRAINSConstellationDetector/src/BRAINSLmkTransform.xml b/BRAINSConstellationDetector/src/BRAINSLmkTransform.xml
@@ -6,7 +6,7 @@
       This utility program estimates the affine transform to align the fixed landmarks to the moving landmarks, and then generate the resampled moving image to the same physical space as that of the reference image.
     </description>
 
-    <version>4.8.0</version>
+    <version>5.0.0</version>
     <documentation-url>http://www.nitrc.org/projects/brainscdetector/</documentation-url>
     <parameters>
         <file fileExtensions=".fcsv">

diff --git a/BRAINSConstellationDetector/src/BRAINSTransformFromFiducials.xml b/BRAINSConstellationDetector/src/BRAINSTransformFromFiducials.xml
@@ -3,7 +3,7 @@
   <category>Registration.Specialized</category>
   <title>Fiducial Registration (BRAINS)</title>
   <description>Computes a rigid, similarity or affine transform from a matched list of fiducials</description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http://www.slicer.org/slicerWiki/index.php/Modules:TransformFromFiducials-Documentation-3.6</documentation-url>
   <license></license>
   <contributor>Casey B Goodlett</contributor>

diff --git a/BRAINSConstellationDetector/src/BRAINSTrimForegroundInDirection.xml b/BRAINSConstellationDetector/src/BRAINSTrimForegroundInDirection.xml
@@ -3,7 +3,7 @@
     <category>Utilities.BRAINS</category>
     <title>Trim Foreground In Direction (BRAINS)</title>
     <description>This program will trim off the neck and also air-filling noise from the inputImage.</description>
-    <version>4.8.0</version>
+    <version>5.0.0</version>
     <documentation-url>http://www.nitrc.org/projects/art/</documentation-url>
     <parameters>
         <image>

diff --git a/BRAINSConstellationDetector/src/BinaryMaskEditorBasedOnLandmarks.xml b/BRAINSConstellationDetector/src/BinaryMaskEditorBasedOnLandmarks.xml
@@ -5,7 +5,7 @@
   <description>
   </description>
 
-    <version>4.8.0</version>
+    <version>5.0.0</version>
     <documentation-url>http://www.nitrc.org/projects/brainscdetector/</documentation-url>
     <parameters>
         <image>

diff --git a/BRAINSConstellationDetector/src/ComputeReflectiveCorrelationMetric.xml b/BRAINSConstellationDetector/src/ComputeReflectiveCorrelationMetric.xml
@@ -4,7 +4,7 @@
   <title>Compute RC metric values in exhausive search</title>
   <description>
   </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url> </documentation-url>
   <license> </license>
   <contributor>Ali Ghayoor</contributor>

diff --git a/BRAINSConstellationDetector/src/insertMidACPCpoint.xml b/BRAINSConstellationDetector/src/insertMidACPCpoint.xml
@@ -5,7 +5,7 @@
   <description>
   This program gets a landmark fcsv file and adds a new landmark as the midpoint between AC and PC points to the output landmark fcsv file
   </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url> </documentation-url>
   <license> </license>
   <contributor>Ali Ghayoor</contributor>

diff --git a/BRAINSConstellationDetector/src/landmarksConstellationAligner.xml b/BRAINSConstellationDetector/src/landmarksConstellationAligner.xml
@@ -5,7 +5,7 @@
   <description>
   This program converts the original landmark files to the acpc-aligned landmark files
   </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url> </documentation-url>
   <license> </license>
   <contributor>Ali Ghayoor</contributor>

diff --git a/BRAINSCut/BRAINSCut.xml b/BRAINSCut/BRAINSCut.xml
@@ -3,7 +3,7 @@
   <category>Segmentation.Specialized</category>
   <title>BRAINSCut (BRAINS)</title>
   <description>Automatic Segmentation using neural networks</description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url></documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>Vince Magnotta, Hans Johnson, Greg Harris, Kent Williams, Eunyoung Regina Kim</contributor>

diff --git a/BRAINSCut/BRAINSFeatureCreators/CannyEdge/CannyEdge.xml b/BRAINSCut/BRAINSFeatureCreators/CannyEdge/CannyEdge.xml
@@ -4,7 +4,7 @@
   <title>Canny Edge Detection</title>
 
   <description>Get the distance from a voxel to the nearest voxel of a given tissue type.</description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http:://www.na-mic.org/</documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>This tool was written by Hans J. Johnson.</contributor>

diff --git a/...ureCreators/CannySegmentationLevelSetImageFilter/CannySegmentationLevelSetImageFilter.xml b/...ureCreators/CannySegmentationLevelSetImageFilter/CannySegmentationLevelSetImageFilter.xml
@@ -5,7 +5,7 @@
   <description>
 The CannySegmentationLevelSet is commonly used to refine a manually generated manual mask.
   </description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url></documentation-url>
   <license>CC</license>
   <contributor>Regina Kim</contributor>

diff --git a/BRAINSCut/BRAINSFeatureCreators/CleanUpOverlapLabels/CleanUpOverlapLabels.xml b/BRAINSCut/BRAINSFeatureCreators/CleanUpOverlapLabels/CleanUpOverlapLabels.xml
@@ -3,7 +3,7 @@
   <category>Utilities.BRAINS</category>
   <title> Clean Up Overla Labels</title>
   <description> Take a series of input binary images and clean up for those overlapped area. Binary volumes given first always wins out</description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url></documentation-url>
   <license></license>
   <contributor>Eun Young Kim</contributor>

diff --git a/BRAINSCut/BRAINSFeatureCreators/CombineLabelToMask/CombineLabelToMask.xml b/BRAINSCut/BRAINSFeatureCreators/CombineLabelToMask/CombineLabelToMask.xml
@@ -4,7 +4,7 @@
   <title>CombineLabelToMask</title>
 
   <description>Combine mask image which has different labels to one label mask</description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http:://www.na-mic.org/</documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>This tool was written by Eunyoung Regina Kim.</contributor>

diff --git a/BRAINSCut/BRAINSFeatureCreators/DilateImage/DilateImage.xml b/BRAINSCut/BRAINSFeatureCreators/DilateImage/DilateImage.xml
@@ -4,7 +4,7 @@
   <title>Dilate Image</title>
 
   <description>Uses mathematical morphology to dilate the input images.</description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http:://www.na-mic.org/</documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>This tool was developed by Mark Scully and Jeremy Bockholt.</contributor>

diff --git a/BRAINSCut/BRAINSFeatureCreators/DilateMask/DilateMask.xml b/BRAINSCut/BRAINSFeatureCreators/DilateMask/DilateMask.xml
@@ -4,7 +4,7 @@
   <title>Dilate Image</title>
 
   <description>Uses mathematical morphology to dilate the input images.</description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http:://www.na-mic.org/</documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>This tool was developed by Mark Scully and Jeremy Bockholt.</contributor>

diff --git a/BRAINSCut/BRAINSFeatureCreators/DistanceMaps/DistanceMaps.xml b/BRAINSCut/BRAINSFeatureCreators/DistanceMaps/DistanceMaps.xml
@@ -4,7 +4,7 @@
   <title>Mauerer Distance</title>
 
   <description>Get the distance from a voxel to the nearest voxel of a given tissue type.</description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http:://www.na-mic.org/</documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>This tool was developed by Mark Scully and Jeremy Bockholt.</contributor>

diff --git a/BRAINSCut/BRAINSFeatureCreators/DumpBinaryTrainingVectors/DumpBinaryTrainingVectors.xml b/BRAINSCut/BRAINSFeatureCreators/DumpBinaryTrainingVectors/DumpBinaryTrainingVectors.xml
@@ -4,7 +4,7 @@
   <title>Erode Image</title>
 
   <description>Uses mathematical morphology to erode the input images.</description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http:://www.na-mic.org/</documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>This tool was developed by Mark Scully and Jeremy Bockholt.</contributor>

diff --git a/BRAINSCut/BRAINSFeatureCreators/ErodeImage/ErodeImage.xml b/BRAINSCut/BRAINSFeatureCreators/ErodeImage/ErodeImage.xml
@@ -4,7 +4,7 @@
   <title>Erode Image</title>
 
   <description>Uses mathematical morphology to erode the input images.</description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http:://www.na-mic.org/</documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>This tool was developed by Mark Scully and Jeremy Bockholt.</contributor>

diff --git a/BRAINSCut/BRAINSFeatureCreators/FlippedDifference/FlippedDifference.xml b/BRAINSCut/BRAINSFeatureCreators/FlippedDifference/FlippedDifference.xml
@@ -4,7 +4,7 @@
   <title>Flip Image</title>
 
   <description>Difference between an image and the axially flipped version of that image.</description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http:://www.na-mic.org/</documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>This tool was developed by Mark Scully and Jeremy Bockholt.</contributor>

diff --git a/BRAINSCut/BRAINSFeatureCreators/GenerateBrainClippedImage/GenerateBrainClippedImage.xml b/BRAINSCut/BRAINSFeatureCreators/GenerateBrainClippedImage/GenerateBrainClippedImage.xml
@@ -3,7 +3,7 @@
   <category>Filtering.FeatureDetection</category>
   <title>GenerateBrainClippedImage</title>
   <description>Automatic FeatureImages using neural networks</description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url></documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor> Eun Young Kim</contributor>

diff --git a/...eCreators/GenerateCsfClippedFromClassifiedImage/GenerateCsfClippedFromClassifiedImage.xml b/...eCreators/GenerateCsfClippedFromClassifiedImage/GenerateCsfClippedFromClassifiedImage.xml
@@ -4,7 +4,7 @@
   <title>GenerateCsfClippedFromClassifiedImage</title>
 
   <description>Get the distance from a voxel to the nearest voxel of a given tissue type.</description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url>http:://www.na-mic.org/</documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>This tool was written by Hans J. Johnson.</contributor>

diff --git a/BRAINSCut/BRAINSFeatureCreators/GenerateSummedGradientImage/GenerateSummedGradientImage.xml b/BRAINSCut/BRAINSFeatureCreators/GenerateSummedGradientImage/GenerateSummedGradientImage.xml
@@ -3,7 +3,7 @@
   <category>Filtering.FeatureDetection</category>
   <title>GenerateSummedGradient</title>
   <description>Automatic FeatureImages using neural networks</description>
-  <version>4.8.0</version>
+  <version>5.0.0</version>
   <documentation-url></documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>Greg Harris, Eun Young Kim</contributor>