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Starred repositories

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A virtual lab of LLM agents for science research

Jupyter Notebook 143 28 Updated Feb 19, 2025
Python 124 14 Updated Feb 12, 2025

Multimodal Whole Slide Foundation Model for Pathology

Jupyter Notebook 173 19 Updated Feb 14, 2025

[MICCAI 2024] Official Code for "MambaMIL: Enhancing Long Sequence Modeling with Sequence Reordering in Computational Pathology"

Python 81 7 Updated Jan 19, 2025

Hibou: Foundational Models for Pathology

Python 62 7 Updated Oct 23, 2024
Python 20 3 Updated Jul 4, 2023

Solid Tumor Associative Modeling in Pathology

Python 63 26 Updated Feb 15, 2025

Transparent medical image AI via an image–text foundation model grounded in medical literature

Python 63 4 Updated Dec 3, 2024

Inference code for HoVer-NeXt

Python 29 7 Updated Feb 12, 2025

Clinical Histopathology Imaging Evaluation Foundation Model

Python 583 92 Updated Feb 20, 2025

A library that integrates different MIL methods into a unified framework

Python 108 7 Updated Feb 26, 2025

Evaluation framework for oncology foundation models (FMs)

Python 86 8 Updated Mar 3, 2025

List of pathology feature extractors and foundation models

102 10 Updated Jan 29, 2025

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

Python 273 50 Updated Jan 10, 2025

Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data

Python 481 65 Updated Sep 30, 2024
Go 1 Updated May 27, 2024
Python 191 9 Updated Jun 24, 2024

O'Reilly book - Building Machine Learning Systems with a feature store: batch, real-time, and LLMs

Jupyter Notebook 1 Updated May 7, 2024

~single day hack of perplexity.ai clone

C# 1 Updated May 15, 2024

macOS command-line utility to limit max battery charge

Swift 2,003 94 Updated Aug 9, 2024

The MAX Platform (includes Mojo)

Mojo 23,762 2,586 Updated Mar 7, 2025

Predicting Axillary Lymph Node Metastasis in Early Breast Cancer Using Deep Learning on Primary Tumor Biopsy Slides, BCNB Dataset

Python 59 12 Updated May 8, 2023

Devika is an Agentic AI Software Engineer that can understand high-level human instructions, break them down into steps, research relevant information, and write code to achieve the given objective…

Python 19,018 2,497 Updated Sep 19, 2024

Towards a general-purpose foundation model for computational pathology - Nature Medicine

Jupyter Notebook 407 58 Updated Jan 15, 2025

A beautiful, simple, clean, and responsive Jekyll theme for academics

HTML 12,364 11,630 Updated Mar 2, 2025

Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀

Jupyter Notebook 148 12 Updated Jan 29, 2024

Get up and running with Llama 3.3, DeepSeek-R1, Phi-4, Gemma 2, and other large language models.

Go 131,544 10,806 Updated Mar 7, 2025

My first website

1 Updated Sep 30, 2017
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