Set _pdbx_database_status.process_site to RCSB also on HOLD.

informatics-isi-edu · Feb 28, 2024 · 6749556 · 6749556
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diff --git a/scripts/pdb_processing/worker/pdb/clientlib/pdb_workflow_processing_lib/client.py b/scripts/pdb_processing/worker/pdb/clientlib/pdb_workflow_processing_lib/client.py
@@ -51,7 +51,7 @@
 mmCIF_hold_records="""_pdbx_database_status.status_code                     <status_code>
 _pdbx_database_status.entry_id                        <entry_id>
 _pdbx_database_status.deposit_site                    ?
-_pdbx_database_status.process_site                    ?
+_pdbx_database_status.process_site                    RCSB
 _pdbx_database_status.recvd_initial_deposition_date   <deposition_date> 
 #
 """

diff --git a/scripts/ubuntu/deploy.sh b/scripts/ubuntu/deploy.sh
@@ -37,6 +37,10 @@ git clone https://github.com/informatics-isi-edu/deriva-py.git /home/isrddev/der
 git clone https://github.com/informatics-isi-edu/protein-database.git /home/isrddev/protein-database
 chown -R isrddev:isrddev /home/isrddev
 
+# Install py-rcsb_db
+wget https://salilab.org/~arthur/ihmv/packages/py-rcsb_db_v0.86.tar.gz
+tar -xzf py-rcsb_db_v0.86.tar.gz
+
 # Install SELinux packages
 apt -y install policycoreutils