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Update compare interventions episode #49

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amanda-minter
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An update to the episode on comparing interventions, fixes #7 and #8 by adding sections on the Vacamole and Ebola models.

added section on comparing different scenarios of interventions, utilising outcomes_averted to calculate impact of interventions while accounting for uncertainty in R0
added a cumulative visualisation for interventions
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github-actions bot commented Sep 10, 2024

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Thanks for putting together, I've made a few edits to Rmd for clarity/readability. I haven't compiled into HTML, though, so can't comment on figures etc.

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@amanda-minter amanda-minter merged this pull request into epiverse-trace:main Oct 23, 2024
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@amanda-minter amanda-minter deleted the update-compare-interventions branch October 23, 2024 13:25
chartgerink pushed a commit that referenced this pull request Oct 28, 2024
Auto-generated via {sandpaper}
Source  : 02cd5c96b8d4c68165dc01b749247cb2800fa379
Branch  : main
Author  : Amanda Minter <[email protected]>
Time    : 2024-10-23 13:25:21 +0000
Message : Update compare interventions episode (#49)

* add section on using comparing interventions

added section on comparing different scenarios of interventions, utilising outcomes_averted to calculate impact of interventions while accounting for uncertainty in R0

* minor edits to text

* add new visualisation

added a cumulative visualisation for interventions

* added text to sections

* extend vacamole challenge and ebola challenge

* edits to text

* Apply suggestions from code review

Co-authored-by: Adam Kucharski <[email protected]>

* Update episodes/compare-interventions.Rmd

Co-authored-by: Adam Kucharski <[email protected]>

* lint file

---------

Co-authored-by: Adam Kucharski <[email protected]>
chartgerink pushed a commit that referenced this pull request Oct 28, 2024
Auto-generated via {sandpaper}
Source  : 6e93672
Branch  : md-outputs
Author  : GitHub Actions <[email protected]>
Time    : 2024-10-23 13:29:24 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 02cd5c96b8d4c68165dc01b749247cb2800fa379
Branch  : main
Author  : Amanda Minter <[email protected]>
Time    : 2024-10-23 13:25:21 +0000
Message : Update compare interventions episode (#49)

* add section on using comparing interventions

added section on comparing different scenarios of interventions, utilising outcomes_averted to calculate impact of interventions while accounting for uncertainty in R0

* minor edits to text

* add new visualisation

added a cumulative visualisation for interventions

* added text to sections

* extend vacamole challenge and ebola challenge

* edits to text

* Apply suggestions from code review

Co-authored-by: Adam Kucharski <[email protected]>

* Update episodes/compare-interventions.Rmd

Co-authored-by: Adam Kucharski <[email protected]>

* lint file

---------

Co-authored-by: Adam Kucharski <[email protected]>
github-actions bot pushed a commit that referenced this pull request Oct 28, 2024
Auto-generated via {sandpaper}
Source  : 6e93672
Branch  : md-outputs
Author  : GitHub Actions <[email protected]>
Time    : 2024-10-23 13:29:24 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 02cd5c96b8d4c68165dc01b749247cb2800fa379
Branch  : main
Author  : Amanda Minter <[email protected]>
Time    : 2024-10-23 13:25:21 +0000
Message : Update compare interventions episode (#49)

* add section on using comparing interventions

added section on comparing different scenarios of interventions, utilising outcomes_averted to calculate impact of interventions while accounting for uncertainty in R0

* minor edits to text

* add new visualisation

added a cumulative visualisation for interventions

* added text to sections

* extend vacamole challenge and ebola challenge

* edits to text

* Apply suggestions from code review

Co-authored-by: Adam Kucharski <[email protected]>

* Update episodes/compare-interventions.Rmd

Co-authored-by: Adam Kucharski <[email protected]>

* lint file

---------

Co-authored-by: Adam Kucharski <[email protected]>
github-actions bot pushed a commit that referenced this pull request Oct 29, 2024
Auto-generated via {sandpaper}
Source  : 6e93672
Branch  : md-outputs
Author  : GitHub Actions <[email protected]>
Time    : 2024-10-23 13:29:24 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 02cd5c96b8d4c68165dc01b749247cb2800fa379
Branch  : main
Author  : Amanda Minter <[email protected]>
Time    : 2024-10-23 13:25:21 +0000
Message : Update compare interventions episode (#49)

* add section on using comparing interventions

added section on comparing different scenarios of interventions, utilising outcomes_averted to calculate impact of interventions while accounting for uncertainty in R0

* minor edits to text

* add new visualisation

added a cumulative visualisation for interventions

* added text to sections

* extend vacamole challenge and ebola challenge

* edits to text

* Apply suggestions from code review

Co-authored-by: Adam Kucharski <[email protected]>

* Update episodes/compare-interventions.Rmd

Co-authored-by: Adam Kucharski <[email protected]>

* lint file

---------

Co-authored-by: Adam Kucharski <[email protected]>
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add challenge on comparing interventions for the Ebola case study
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