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@crukci-bioinformatics

CRUK Cambridge Institute - Bioinformatics Core

The Bioinformatics Core of the Cancer Research UK Cambridge Institute. Part of the University of Cambridge.

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  1. MGA MGA Public archive

    The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.

    Java 25 1

  2. rascal rascal Public

    R package and Shiny app providing functions for scaling relative copy number to absolute values for shallow whole genome sequencing of cancer samples.

    R 12 4

  3. clarityclient clarityclient Public

    A Java client for working with Genologics' REST API.

    Java 5 4

  4. PlateLayout PlateLayout Public

    Plate randomistation using R

    R 4 2

  5. ampliconseq ampliconseq Public

    Variant calling pipeline for amplicon sequencing data

    R 4

  6. mga2 mga2 Public

    Multi-genome alignment contaminant screen for high-throughput sequence data

    Rust 3 1

Repositories

Showing 10 of 57 repositories
  • nf-alignment Public

    Nextflow based alignment pipeline

    crukci-bioinformatics/nf-alignment’s past year of commit activity
    Nextflow 1 1 0 0 Updated Mar 6, 2025
  • nf-referencebuilder Public
    crukci-bioinformatics/nf-referencebuilder’s past year of commit activity
    Nextflow 0 1 0 0 Updated Mar 6, 2025
  • clarityclient2 Public

    EE10 and modularisation update to the Java Clarity Client.

    crukci-bioinformatics/clarityclient2’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Mar 5, 2025
  • multiqc_mga2_plugin Public

    MultiQC Plugin for MGA 2

    crukci-bioinformatics/multiqc_mga2_plugin’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 4, 2025
  • MultiQC Public Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    crukci-bioinformatics/MultiQC’s past year of commit activity
    JavaScript 0 GPL-3.0 617 0 0 Updated Mar 4, 2025
  • nf_preprocess_scSeq_CRUKCI Public

    Download single cell data from Genomics server and process with CellRanger - specific to CRUK CI infrastructure

    crukci-bioinformatics/nf_preprocess_scSeq_CRUKCI’s past year of commit activity
    Groovy 0 MIT 0 0 0 Updated Feb 19, 2025
  • ampliconseq Public

    Variant calling pipeline for amplicon sequencing data

    crukci-bioinformatics/ampliconseq’s past year of commit activity
    R 4 0 0 0 Updated Jan 21, 2025
  • nextflow-support Public

    Scripts and functions that are helpful in Nextflow pipelines.

    crukci-bioinformatics/nextflow-support’s past year of commit activity
    Groovy 0 MIT 0 0 0 Updated Nov 27, 2024
  • mga2 Public

    Multi-genome alignment contaminant screen for high-throughput sequence data

    crukci-bioinformatics/mga2’s past year of commit activity
    Rust 3 MIT 1 0 0 Updated Nov 18, 2024
  • clarityclient Public

    A Java client for working with Genologics' REST API.

    crukci-bioinformatics/clarityclient’s past year of commit activity
    Java 5 GPL-3.0 4 0 0 Updated Oct 23, 2024
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