Add tool.

cobilab · Nov 20, 2024 · 4b30a51 · 4b30a51
1 parent 3a744f7
commit 4b30a51
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diff --git a/src/Benchmark_FASTA.sh b/src/Benchmark_FASTA.sh
@@ -400,6 +400,39 @@ function RUN_ZSTD {
 #
 # ==============================================================================
 #
+function RUN_MBGC {
+  #
+  IN_FILE="$1";
+  C_COMMAND="$2";
+  D_COMMAND="$3";
+  NAME="$4";
+  #
+  /bin/time -f "TIME\t%e\tMEM\t%M" $C_COMMAND -i $IN_FILE MBGC-OUT.mbgc 1> garbage-MBGC 2> mbgc_tmp_report.txt;
+  cat mbgc_tmp_report.txt | grep "TIME" | tr '.' ',' | awk '{ printf $2/60"\t"$4/1024/1024"\n" }' > c_time_mem.txt;
+  #
+  BYTES=`ls -la MBGC-OUT.mbgc | awk '{ print $5 }'`;
+  #
+  /bin/time -f "TIME\t%e\tMEM\t%M" $D_COMMAND MBGC-OUT.mbgc MBGC-D-OUT 1> garbage-MBGC 2> mbgc_tmp_report.txt
+  cat mbgc_tmp_report.txt | grep "TIME" | tr '.' ',' | awk '{ printf $2/60"\t"$4/1024/1024"\n" }' > d_time_mem.txt;
+  #
+  cmp MBGC-D-OUT/$IN_FILE $IN_FILE > cmp.txt;
+  #
+  C_TIME=`cat c_time_mem.txt | awk '{ print $1}'`;
+  C_MEME=`cat c_time_mem.txt | awk '{ print $2}'`;
+  D_TIME=`cat d_time_mem.txt | awk '{ print $1}'`;
+  D_MEME=`cat d_time_mem.txt | awk '{ print $2}'`;
+  VERIFY="0";
+  CMP_SIZE=`ls -la cmp.txt | awk '{ print $5}'`
+  if [[ "$CMP_SIZE" != "0" ]]; then CMP_SIZE="1"; fi
+  #
+  printf "$NAME\t$BYTES\t$C_TIME\t$C_MEME\t$D_TIME\t$D_MEME\t$CMP_SIZE\t$5\n";
+  #
+  rm -fr MBGC-OUT.mbgc MBGC-D-OUT garbage-MBGC;
+  #
+  }
+#
+# ==============================================================================
+#
 FILE="$1";
 FILE_NAME="$1";
 #
@@ -474,6 +507,13 @@ RUN_LEON "$FILE" "./leon -nb-cores 1 -lossless -c -file " "./leon -nb-cores 1 -d
 echo "Running zstandard ...";
 RUN_ZSTD "$FILE" "zstd -19" "zstd -d" "Zstandard" "35" >> data.csv;
 #
+echo "Running MBGC ...";
+for((x=1;x<=1;++x)); #UP TO LEVEL 3
+  do
+  echo "Level $x...";
+  RUN_MBGC "$FILE" "./mbgc c -m $x -t 1 " "./mbgc d -t 1 " "MBGC" "24" >> data.csv;
+  done
+#
 printf "PROGRAM\tC_BYTES\tC_TIME (m)\tC_MEM (GB)\tD_TIME (m)\tD_MEM (GB)\tDIFF\tRUN\n";
 cat data.csv;
 #

diff --git a/src/Install_Tools.sh b/src/Install_Tools.sh
@@ -153,6 +153,21 @@ sh INSTALL
 cp leon ..
 cd ..
 #
+# MBGC -------------------------------------------------------------------------
+#
+echo -e "\e[34m[Installer]\e[32m Installing MBGC ...\e[0m";
+rm -fr mbgc
+git clone https://github.com/kowallus/mbgc.git
+cd mbgc
+mkdir build
+cd build
+cmake ..
+make mbgc
+cp mbgc ../../MBGC
+cd ../../
+rm -fr mbgc
+mv MBGC mbgc
+#
 # ------------------------------------------------------------------------------
 #
 # ==============================================================================
@@ -175,5 +190,6 @@ PROGRAM_EXISTS "./paq8l";
 PROGRAM_EXISTS "bzip2";
 PROGRAM_EXISTS "./leon";
 PROGRAM_EXISTS "zstd";
+PROGRAM_EXISTS "./mbgc";
 #
 # ==============================================================================