Automated documentation build for changeset bfdcca6.

_auto_rebin_8h_source.html

@@ -155,13 +155,13 @@
 <div class="ttc" id="classch_1_1_auto_rebin_html_aa08dc119e1c1f3296fbeb59732529338"><div class="ttname"><a href="classch_1_1_auto_rebin.html#aa08dc119e1c1f3296fbeb59732529338">ch::AutoRebin::SetBinThreshold</a></div><div class="ttdeci">AutoRebin &amp; SetBinThreshold(double val)</div><div class="ttdoc">The threshold for which we consider merging bins containing less than this value. ...</div><div class="ttdef"><b>Definition:</b> <a href="_auto_rebin_8h_source.html#l00078">AutoRebin.h:78</a></div></div>
 <div class="ttc" id="classch_1_1_combine_harvester_html"><div class="ttname"><a href="classch_1_1_combine_harvester.html">ch::CombineHarvester</a></div><div class="ttdef"><b>Definition:</b> <a href="_combine_harvester_8h_source.html#l00030">CombineHarvester.h:30</a></div></div>
 <div class="ttc" id="classch_1_1_auto_rebin_html_a934b5cdc81e812c6507ab33ddf6621d2"><div class="ttname"><a href="classch_1_1_auto_rebin.html#a934b5cdc81e812c6507ab33ddf6621d2">ch::AutoRebin::SetVerbosity</a></div><div class="ttdeci">AutoRebin &amp; SetVerbosity(unsigned verbosity)</div><div class="ttdoc">Set to a value greater than zero for more verbose output. </div><div class="ttdef"><b>Definition:</b> <a href="_auto_rebin_8h_source.html#l00069">AutoRebin.h:69</a></div></div>
-<div class="ttc" id="classch_1_1_auto_rebin_html_a72dbe98c7aacd48dd99d03d2b957a934"><div class="ttname"><a href="classch_1_1_auto_rebin.html#a72dbe98c7aacd48dd99d03d2b957a934">ch::AutoRebin::GetMaximumFracUncertBin</a></div><div class="ttdeci">int GetMaximumFracUncertBin(TH1F &amp;total_bkg)</div><div class="ttdoc">Return bin with maximum value of fractional error. </div><div class="ttdef"><b>Definition:</b> <a href="_auto_rebin_8cc_source.html#l00330">AutoRebin.cc:330</a></div></div>
+<div class="ttc" id="classch_1_1_auto_rebin_html_a72dbe98c7aacd48dd99d03d2b957a934"><div class="ttname"><a href="classch_1_1_auto_rebin.html#a72dbe98c7aacd48dd99d03d2b957a934">ch::AutoRebin::GetMaximumFracUncertBin</a></div><div class="ttdeci">int GetMaximumFracUncertBin(TH1F &amp;total_bkg)</div><div class="ttdoc">Return bin with maximum value of fractional error. </div><div class="ttdef"><b>Definition:</b> <a href="_auto_rebin_8cc_source.html#l00336">AutoRebin.cc:336</a></div></div>
 <div class="ttc" id="classch_1_1_auto_rebin_html_a9305a4b7d600e31a17ccc6606d488825"><div class="ttname"><a href="classch_1_1_auto_rebin.html#a9305a4b7d600e31a17ccc6606d488825">ch::AutoRebin::AutoRebin</a></div><div class="ttdeci">AutoRebin()</div><div class="ttdef"><b>Definition:</b> <a href="_auto_rebin_8cc_source.html#l00010">AutoRebin.cc:10</a></div></div>
 <div class="ttc" id="_combine_harvester_8h_html"><div class="ttname"><a href="_combine_harvester_8h.html">CombineHarvester.h</a></div></div>
 <div class="ttc" id="namespacech_html"><div class="ttname"><a href="namespacech.html">ch</a></div><div class="ttdef"><b>Definition:</b> <a href="_algorithm_8h_source.html#l00010">Algorithm.h:10</a></div></div>
 <div class="ttc" id="classch_1_1_auto_rebin_html"><div class="ttname"><a href="classch_1_1_auto_rebin.html">ch::AutoRebin</a></div><div class="ttdoc">Tests for any bins below a certain threshold and if they exist merges them with neighborouring bins...</div><div class="ttdef"><b>Definition:</b> <a href="_auto_rebin_8h_source.html#l00019">AutoRebin.h:19</a></div></div>
 <div class="ttc" id="classch_1_1_auto_rebin_html_ab156ebbbbbfc264c736d06f182da7c25"><div class="ttname"><a href="classch_1_1_auto_rebin.html#ab156ebbbbbfc264c736d06f182da7c25">ch::AutoRebin::SetBinUncertFraction</a></div><div class="ttdeci">AutoRebin &amp; SetBinUncertFraction(double val)</div><div class="ttdoc">The threshold on the bin uncertainty fraction for which we consider merging bins containing less than...</div><div class="ttdef"><b>Definition:</b> <a href="_auto_rebin_8h_source.html#l00087">AutoRebin.h:87</a></div></div>
-<div class="ttc" id="classch_1_1_auto_rebin_html_a2dc97baa47e812e6aa1817f604e2541a"><div class="ttname"><a href="classch_1_1_auto_rebin.html#a2dc97baa47e812e6aa1817f604e2541a">ch::AutoRebin::FindNewBinning</a></div><div class="ttdeci">void FindNewBinning(TH1F &amp;total_bkg, std::vector&lt; double &gt; &amp;new_bins, double bin_condition, double bin_uncert_fraction, int mode)</div><div class="ttdoc">Pass through the total background histogram to find bins failing the required condition ("empty" bins...</div><div class="ttdef"><b>Definition:</b> <a href="_auto_rebin_8cc_source.html#l00098">AutoRebin.cc:98</a></div></div>
+<div class="ttc" id="classch_1_1_auto_rebin_html_a2dc97baa47e812e6aa1817f604e2541a"><div class="ttname"><a href="classch_1_1_auto_rebin.html#a2dc97baa47e812e6aa1817f604e2541a">ch::AutoRebin::FindNewBinning</a></div><div class="ttdeci">void FindNewBinning(TH1F &amp;total_bkg, std::vector&lt; double &gt; &amp;new_bins, double bin_condition, double bin_uncert_fraction, int mode)</div><div class="ttdoc">Pass through the total background histogram to find bins failing the required condition ("empty" bins...</div><div class="ttdef"><b>Definition:</b> <a href="_auto_rebin_8cc_source.html#l00104">AutoRebin.cc:104</a></div></div>
 <div class="ttc" id="classch_1_1_auto_rebin_html_a88bd0408dd758d31fe3f60815bbec5d3"><div class="ttname"><a href="classch_1_1_auto_rebin.html#a88bd0408dd758d31fe3f60815bbec5d3">ch::AutoRebin::SetPerformRebin</a></div><div class="ttdeci">AutoRebin &amp; SetPerformRebin(bool val)</div><div class="ttdoc">Whether to actually perform the rebinning or just print it out. </div><div class="ttdef"><b>Definition:</b> <a href="_auto_rebin_8h_source.html#l00103">AutoRebin.h:103</a></div></div>
 <div class="ttc" id="classch_1_1_auto_rebin_html_a5bac592f221a124caa199530c4a0d1d0"><div class="ttname"><a href="classch_1_1_auto_rebin.html#a5bac592f221a124caa199530c4a0d1d0">ch::AutoRebin::SetRebinMode</a></div><div class="ttdeci">AutoRebin &amp; SetRebinMode(int val)</div><div class="ttdoc">Flag to perform different versions of rebinning algorithm. </div><div class="ttdef"><b>Definition:</b> <a href="_auto_rebin_8h_source.html#l00095">AutoRebin.h:95</a></div></div>
 <div class="ttc" id="classch_1_1_auto_rebin_html_af9525ed197d8b5742695c729645ea4a2"><div class="ttname"><a href="classch_1_1_auto_rebin.html#af9525ed197d8b5742695c729645ea4a2">ch::AutoRebin::Rebin</a></div><div class="ttdeci">void Rebin(CombineHarvester &amp;src, CombineHarvester &amp;dest)</div><div class="ttdoc">Work out optimal binning using the total background histogram built from src, and apply the binning t...</div><div class="ttdef"><b>Definition:</b> <a href="_auto_rebin_8cc_source.html#l00018">AutoRebin.cc:18</a></div></div>

_main_8md_source.html

@@ -133,11 +133,11 @@
 <div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;  * **CombineHarvester/CombineTools**, which contains the CombineHarvester class and other parts of the core framework</div>
 <div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;  * **CombineHarvester/CombinePdfs**, which provides tools for building custom RooFit pdfs</div>
 <div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;</div>
-<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;The CMSSW version that should be used with CombineHarvester is driven by the recommendation for the HiggsAnalysis/CombinedLimit package, which is also required. The latest instructions can be found [here](https://twiki.cern.ch/twiki/bin/viewauth/CMS/SWGuideHiggsAnalysisCombinedLimit#ROOT6_SLC6_release_CMSSW_7_4_X). Note that the CombineHarvester framework is only compatible with the CMSSW 7_X_Y series releases.  A new release area can be set up and compiled in the following steps:</div>
+<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;The CMSSW version that should be used with CombineHarvester is driven by the recommendation for the HiggsAnalysis/CombinedLimit package, which is also required. The latest instructions can be found [here](https://cms-hcomb.gitbooks.io/combine/content/part1/#for-end-users-that-dont-need-to-commit-or-do-any-development). The CombineHarvester framework is  compatible with the CMSSW 7_4_X and 8_1_X series releases. A new release area can be set up and compiled in the following steps:</div>
 <div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;</div>
-<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;    export SCRAM_ARCH=slc6_amd64_gcc491</div>
-<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;    scram project CMSSW CMSSW_7_4_7</div>
-<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;    cd CMSSW_7_4_7/src</div>
+<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;    export SCRAM_ARCH=slc6_amd64_gcc530</div>
+<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;    scram project CMSSW CMSSW_8_1_0</div>
+<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;    cd CMSSW_8_1_0/src</div>
 <div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;    cmsenv</div>
 <div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;    git clone https://github.com/cms-analysis/HiggsAnalysis-CombinedLimit.git HiggsAnalysis/CombinedLimit</div>
 <div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;    # IMPORTANT: Checkout the recommended tag on the link above</div>

classch_1_1_auto_rebin.html

@@ -254,7 +254,7 @@ <h2 class="groupheader">Member Function Documentation</h2>
 <li>Repeats with new lowest bin until all bins pass threshold </li>
 </ul>
 
-<p>Definition at line <a class="el" href="_auto_rebin_8cc_source.html#l00098">98</a> of file <a class="el" href="_auto_rebin_8cc_source.html">AutoRebin.cc</a>.</p>
+<p>Definition at line <a class="el" href="_auto_rebin_8cc_source.html#l00104">104</a> of file <a class="el" href="_auto_rebin_8cc_source.html">AutoRebin.cc</a>.</p>
 
 </div>
 </div>
@@ -274,7 +274,7 @@ <h2 class="groupheader">Member Function Documentation</h2>
 
 <p>Return bin with maximum value of fractional error. </p>
 
-<p>Definition at line <a class="el" href="_auto_rebin_8cc_source.html#l00330">330</a> of file <a class="el" href="_auto_rebin_8cc_source.html">AutoRebin.cc</a>.</p>
+<p>Definition at line <a class="el" href="_auto_rebin_8cc_source.html#l00336">336</a> of file <a class="el" href="_auto_rebin_8cc_source.html">AutoRebin.cc</a>.</p>
 
 </div>
 </div>

index.html

@@ -131,9 +131,9 @@ <h1><a class="anchor" id="getting-started"></a>
 <li><b>CombineHarvester/CombineTools</b>, which contains the CombineHarvester class and other parts of the core framework</li>
 <li><b>CombineHarvester/CombinePdfs</b>, which provides tools for building custom RooFit pdfs</li>
 </ul>
-<p>The CMSSW version that should be used with CombineHarvester is driven by the recommendation for the HiggsAnalysis/CombinedLimit package, which is also required. The latest instructions can be found <a href="https://twiki.cern.ch/twiki/bin/viewauth/CMS/SWGuideHiggsAnalysisCombinedLimit#ROOT6_SLC6_release_CMSSW_7_4_X">here</a>. Note that the CombineHarvester framework is only compatible with the CMSSW 7_X_Y series releases. A new release area can be set up and compiled in the following steps: </p><pre class="fragment">export SCRAM_ARCH=slc6_amd64_gcc491
-scram project CMSSW CMSSW_7_4_7
-cd CMSSW_7_4_7/src
+<p>The CMSSW version that should be used with CombineHarvester is driven by the recommendation for the HiggsAnalysis/CombinedLimit package, which is also required. The latest instructions can be found <a href="https://cms-hcomb.gitbooks.io/combine/content/part1/#for-end-users-that-dont-need-to-commit-or-do-any-development">here</a>. The CombineHarvester framework is compatible with the CMSSW 7_4_X and 8_1_X series releases. A new release area can be set up and compiled in the following steps: </p><pre class="fragment">export SCRAM_ARCH=slc6_amd64_gcc530
+scram project CMSSW CMSSW_8_1_0
+cd CMSSW_8_1_0/src
 cmsenv
 git clone https://github.com/cms-analysis/HiggsAnalysis-CombinedLimit.git HiggsAnalysis/CombinedLimit
 # IMPORTANT: Checkout the recommended tag on the link above

intro_morph.html

@@ -227,7 +227,7 @@ <h1><a class="anchor" id="SMMorph"></a>
 <div class="line">      <span class="keywordflow">for</span> (<span class="keyword">auto</span> bin : bins) {</div>
 <div class="line">        <span class="keywordflow">for</span> (<span class="keyword">auto</span> p : sig_procs) {</div>
 <div class="line">          <a class="code" href="namespacech.html#a64d9f4241e5148c2ab549c40a731dc8c">ch::BuildRooMorphing</a>(ws, cb, bin, p, mh, <span class="stringliteral">&quot;norm&quot;</span>,</div>
-<div class="line">                               can_morph[chn], <span class="keyword">true</span>, <span class="keyword">nullptr</span> <span class="comment">/*&amp;demo*/</span>);</div>
+<div class="line">                               can_morph[chn], <span class="keyword">true</span>, <span class="keyword">false</span>, <span class="keyword">nullptr</span> <span class="comment">/*&amp;demo*/</span>);</div>
 <div class="line">        }</div>
 <div class="line">      }</div>
 <div class="line">    }</div>