#45 fix variable names

cbg-ethz · Feb 27, 2025 · 941060e · 941060e
1 parent 9f3bec4
commit 941060e
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/viloca/shorah_snv.py b/viloca/shorah_snv.py
@@ -557,7 +557,7 @@ def main(args):
             file_stem = "w-%s-%s-%s" % (chrom, beg, end)
             haplo_filename = os.path.join(working_dir, "haplotypes", file_stem + ".reads-support.fas")
             ref_name = os.path.join(working_dir, "haplotypes", file_stem + ".ref.fas")
-            tmp_df.append(get_cooccuring_muts_haplo_df(fname_haplo, fname_ref, beg,end,chrom))
+            tmp_df.append(get_cooccuring_muts_haplo_df(haplo_filename, ref_name, beg,end,chrom))
     pd.concat(tmp_df).to_csv("cooccurring_mutations.csv")
     # finish  write: "cooccurring_mutations.csv"