Extract avros for a VDS but only include the NEW samples that are in Foxtrot #5088
RoriCremergatk-tests.yml
on: pull_request
check if the environment has privileges
0s
build and push gatk docker to artifacts
3h 14m
Validate script WDLs using womtools
1m 15s
Validate generated WDLs using womtools
13m 34s
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
Annotations
15 errors and 18 warnings
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Java 17.0.6+10 build and test cloud
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 build and test cloud
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/setup-gcloud
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Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/setup-gcloud
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Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 build and test integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
|
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Java 17.0.6+10 build and test integration
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/setup-gcloud
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WDL test RUN_CNN_WDL on cromwell
Process completed with exit code 1.
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Java 17.0.6+10 test on docker unit
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/setup-gcloud
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Java 17.0.6+10 test on docker unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 test on docker conda
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/setup-gcloud
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Java 17.0.6+10 test on docker conda
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
|
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Java 17.0.6+10 test on docker variantcalling
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
|
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Java 17.0.6+10 test on docker variantcalling
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/setup-gcloud
|
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Java 17.0.6+10 test on docker integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
|
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Java 17.0.6+10 test on docker integration
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/setup-gcloud
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Validate script WDLs using womtools
Cache not found for keys: setup-java-Linux-x64-gradle-ba62d0449bc5244dfc3bf0ed00ad0eef42547f190650bbecf54f52acbf26a4a0
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Validate generated WDLs using womtools
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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Validate generated WDLs using womtools
Cache not found for keys: setup-java-Linux-x64-gradle-ba62d0449bc5244dfc3bf0ed00ad0eef42547f190650bbecf54f52acbf26a4a0
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Java 17.0.6+10 build and test cloud
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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Java 17.0.6+10 build and test cloud
Cache not found for keys: setup-java-Linux-x64-gradle-ba62d0449bc5244dfc3bf0ed00ad0eef42547f190650bbecf54f52acbf26a4a0
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Java 17.0.6+10 build and test unit
Cache not found for keys: setup-java-Linux-x64-gradle-ba62d0449bc5244dfc3bf0ed00ad0eef42547f190650bbecf54f52acbf26a4a0
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Java 17.0.6+10 build and test unit
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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Java 17.0.6+10 build and test integration
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
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Java 17.0.6+10 build and test integration
Cache not found for keys: setup-java-Linux-x64-gradle-ba62d0449bc5244dfc3bf0ed00ad0eef42547f190650bbecf54f52acbf26a4a0
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WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
Cache not found for keys: setup-java-Linux-x64-gradle-ba62d0449bc5244dfc3bf0ed00ad0eef42547f190650bbecf54f52acbf26a4a0
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WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_CNN_WDL on cromwell
Cache not found for keys: setup-java-Linux-x64-gradle-ba62d0449bc5244dfc3bf0ed00ad0eef42547f190650bbecf54f52acbf26a4a0
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WDL test RUN_M2_WDL on cromwell
Cache not found for keys: setup-java-Linux-x64-gradle-ba62d0449bc5244dfc3bf0ed00ad0eef42547f190650bbecf54f52acbf26a4a0
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WDL test RUN_M2_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_CNV_SOMATIC_WDL on cromwell
Cache not found for keys: setup-java-Linux-x64-gradle-ba62d0449bc5244dfc3bf0ed00ad0eef42547f190650bbecf54f52acbf26a4a0
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WDL test RUN_CNV_SOMATIC_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Cache not found for keys: setup-java-Linux-x64-gradle-ba62d0449bc5244dfc3bf0ed00ad0eef42547f190650bbecf54f52acbf26a4a0
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WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
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gatkDockerImage
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2.24 GB |
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test-results-17.0.6+10-cloud
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95.2 KB |
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test-results-17.0.6+10-integration
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566 KB |
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test-results-17.0.6+10-unit
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12.1 MB |
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test-results-docker-17.0.6+10-conda
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55.9 KB |
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test-results-docker-17.0.6+10-integration
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568 KB |
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test-results-docker-17.0.6+10-unit
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11.9 MB |
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test-results-docker-17.0.6+10-variantcalling
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31.2 KB |
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