Skip to content

Commit

Permalink
push rendered /_site
Browse files Browse the repository at this point in the history
  • Loading branch information
katherinehebert committed Nov 18, 2022
1 parent c316761 commit 5fb7767
Show file tree
Hide file tree
Showing 268 changed files with 76,181 additions and 7 deletions.
2 changes: 1 addition & 1 deletion .quarto/xref/1893bfdc
Original file line number Diff line number Diff line change
@@ -1 +1 @@
{"headings":["instructor","outline","get-course-materials","install-required-software","get-the-notes","useful-resources","references","license"],"entries":[]}
{"entries":[],"headings":["instructor","outline","get-course-materials","install-required-software","get-the-notes","useful-resources","references","license"]}
2 changes: 1 addition & 1 deletion .quarto/xref/1b4954b9
Original file line number Diff line number Diff line change
@@ -1 +1 @@
{"entries":[],"headings":["mise-en-place-development-environment","the-structure-flour-and-sugar","the-description-file","keeping-notes","useful-links"]}
{"headings":["mise-en-place-development-environment","the-structure-flour-and-sugar","the-description-file","keeping-notes","useful-links"],"entries":[]}
2 changes: 1 addition & 1 deletion .quarto/xref/3766ef87
Original file line number Diff line number Diff line change
@@ -1 +1 @@
{"entries":[],"headings":["introduction-to-edi-concepts-in-a-scientific-context","introduction-aux-concepts-edi-en-contexte-scientifique"]}
{"headings":["introduction-to-edi-concepts-in-a-scientific-context","introduction-aux-concepts-edi-en-contexte-scientifique"],"entries":[]}
2 changes: 1 addition & 1 deletion .quarto/xref/442bc2ed
Original file line number Diff line number Diff line change
@@ -1 +1 @@
{"entries":[],"headings":["spatial-statistics-in-ecology","course-outline","introduction","types-of-spatial-analyses","stationarity-and-isotropy","georeferenced-data","point-pattern","point-pattern-and-point-process","complete-spatial-randomness","exploratory-or-inferential-analysis-for-a-point-pattern","ripleys-k-function","edge-effects","example","exercise-1","effect-of-heterogeneity","exercise-2","relationship-between-two-point-patterns","questions","marked-point-patterns","references","solutions","exercise-1-1","exercise-2-1","spatial-correlation","intrinsic-or-induced-dependence","different-ways-to-model-spatial-effects","geostat-models","variogram","theoretical-models-for-the-variogram","empirical-variogram","regression-model-with-spatial-correlation","geostatistical-models-in-r","regression-with-spatial-correlation","exercise","kriging","solutions-1","areal-data","moran-i","spatial-autoreg","conditional-autoregressive-car-model","simultaneous-autoregressive-sar-model","analysis-areal","definition-of-the-neighbourhood-network","spatial-autoregression-models","exercise-3","reference","glmm-spatial-gaussian","data","non-spatial-glmm","spatial-glmm-with-spamm","gaussian-process-models-vs.-smoothing-splines","bayesian-methods-for-glmms-with-gaussian-processes","glmm-spatial-autoreg","reference-1","statistiques-spatiales-en-écologie","plan-du-cours","introduction-fr","types-danalyses-spatiales","stationnarité-et-isotropie","données-géoréférencées","point-pattern-fr","patron-de-points-et-processus-ponctuel","structure-spatiale-totalement-aléatoire","analyse-exploratoire-ou-inférentielle-pour-un-patron-de-points","indice-k-de-ripley","effets-de-bordure","exemple","exercice-1","effet-de-lhétérogénéité","exercice-2","relation-entre-deux-patrons-de-points","questions-1","patrons-de-points-marqués","références","solutions-2","exercice-1-1","exercice-2-1","spatial-correlation-fr","dépendance-intrinsèque-ou-induite","différentes-façons-de-modéliser-les-effets-spatiaux","geostat-models-fr","variogramme","modèles-théoriques-du-variogramme","variogramme-empirique","modèle-de-régression-avec-corrélation-spatiale","modèles-géostatistiques-dans-r","régression-avec-corrélation-spatiale","exercice","krigeage","solutions-3","areal-data-fr","moran-i-fr","spatial-autoreg-fr","autorégression-conditionnelle-car","autorégression-simultanée-sar","analysis-areal-fr","définition-du-réseau-de-voisinage","modèles-dautorégression-spatiale","exercice-3","référence","glmm-spatial-gaussian-fr","données","glmm-non-spatial","glmm-spatial-avec-spamm","processus-gaussiens-vs.-splines-de-lissage","méthodes-bayésiennes-pour-les-glmm-avec-processus-gaussiens","glmm-spatial-autoreg-fr","référence-1"]}
{"headings":["spatial-statistics-in-ecology","course-outline","introduction","types-of-spatial-analyses","stationarity-and-isotropy","georeferenced-data","point-pattern","point-pattern-and-point-process","complete-spatial-randomness","exploratory-or-inferential-analysis-for-a-point-pattern","ripleys-k-function","edge-effects","example","exercise-1","effect-of-heterogeneity","exercise-2","relationship-between-two-point-patterns","questions","marked-point-patterns","references","solutions","exercise-1-1","exercise-2-1","spatial-correlation","intrinsic-or-induced-dependence","different-ways-to-model-spatial-effects","geostat-models","variogram","theoretical-models-for-the-variogram","empirical-variogram","regression-model-with-spatial-correlation","geostatistical-models-in-r","regression-with-spatial-correlation","exercise","kriging","solutions-1","areal-data","moran-i","spatial-autoreg","conditional-autoregressive-car-model","simultaneous-autoregressive-sar-model","analysis-areal","definition-of-the-neighbourhood-network","spatial-autoregression-models","exercise-3","reference","glmm-spatial-gaussian","data","non-spatial-glmm","spatial-glmm-with-spamm","gaussian-process-models-vs.-smoothing-splines","bayesian-methods-for-glmms-with-gaussian-processes","glmm-spatial-autoreg","reference-1","statistiques-spatiales-en-écologie","plan-du-cours","introduction-fr","types-danalyses-spatiales","stationnarité-et-isotropie","données-géoréférencées","point-pattern-fr","patron-de-points-et-processus-ponctuel","structure-spatiale-totalement-aléatoire","analyse-exploratoire-ou-inférentielle-pour-un-patron-de-points","indice-k-de-ripley","effets-de-bordure","exemple","exercice-1","effet-de-lhétérogénéité","exercice-2","relation-entre-deux-patrons-de-points","questions-1","patrons-de-points-marqués","références","solutions-2","exercice-1-1","exercice-2-1","spatial-correlation-fr","dépendance-intrinsèque-ou-induite","différentes-façons-de-modéliser-les-effets-spatiaux","geostat-models-fr","variogramme","modèles-théoriques-du-variogramme","variogramme-empirique","modèle-de-régression-avec-corrélation-spatiale","modèles-géostatistiques-dans-r","régression-avec-corrélation-spatiale","exercice","krigeage","solutions-3","areal-data-fr","moran-i-fr","spatial-autoreg-fr","autorégression-conditionnelle-car","autorégression-simultanée-sar","analysis-areal-fr","définition-du-réseau-de-voisinage","modèles-dautorégression-spatiale","exercice-3","référence","glmm-spatial-gaussian-fr","données","glmm-non-spatial","glmm-spatial-avec-spamm","processus-gaussiens-vs.-splines-de-lissage","méthodes-bayésiennes-pour-les-glmm-avec-processus-gaussiens","glmm-spatial-autoreg-fr","référence-1"],"entries":[]}
2 changes: 1 addition & 1 deletion .quarto/xref/a07a8c4b
Original file line number Diff line number Diff line change
@@ -1 +1 @@
{"entries":[],"headings":["why-do-you-want-to-use-shiny","hello-shiny","how-a-shiny-app-works","building-blocks","ids","organisation","plots","user-interface","server","the-shiny-app","customising-the-theme","using-built-in-themes","using-a-custom-theme","customizing-a-theme","constructing-a-shiny-app-using-shinydashboards","taking-advantage-of-good-defaults","using-shinydashboard","populating-the-layout","challenge","see-the-completed-app","constructing-a-shiny-app-using-golem","golem-modules","selecting-the-volcanoes","barplot-of-continents"]}
{"headings":["why-do-you-want-to-use-shiny","hello-shiny","how-a-shiny-app-works","building-blocks","ids","organisation","plots","user-interface","server","the-shiny-app","customising-the-theme","using-built-in-themes","using-a-custom-theme","customizing-a-theme","constructing-a-shiny-app-using-shinydashboards","taking-advantage-of-good-defaults","using-shinydashboard","populating-the-layout","challenge","see-the-completed-app","constructing-a-shiny-app-using-golem","golem-modules","selecting-the-volcanoes","barplot-of-continents"],"entries":[]}
2 changes: 1 addition & 1 deletion .quarto/xref/c738fe30
Original file line number Diff line number Diff line change
@@ -1 +1 @@
{"entries":[],"headings":[]}
{"headings":[],"entries":[]}
2 changes: 1 addition & 1 deletion .quarto/xref/d5122045
Original file line number Diff line number Diff line change
@@ -1 +1 @@
{"entries":[],"headings":[]}
{"headings":[],"entries":[]}
Binary file added _site/Bios2_reverse.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
290 changes: 290 additions & 0 deletions _site/about.html
Original file line number Diff line number Diff line change
@@ -0,0 +1,290 @@
<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.2.253">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">


<title>BIOS2 Education resources - About</title>
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
div.columns{display: flex; gap: min(4vw, 1.5em);}
div.column{flex: auto; overflow-x: auto;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
ul.task-list li input[type="checkbox"] {
width: 0.8em;
margin: 0 0.8em 0.2em -1.6em;
vertical-align: middle;
}
</style>


<script src="site_libs/quarto-nav/quarto-nav.js"></script>
<script src="site_libs/quarto-nav/headroom.min.js"></script>
<script src="site_libs/clipboard/clipboard.min.js"></script>
<script src="site_libs/quarto-search/autocomplete.umd.js"></script>
<script src="site_libs/quarto-search/fuse.min.js"></script>
<script src="site_libs/quarto-search/quarto-search.js"></script>
<meta name="quarto:offset" content="./">
<script src="site_libs/quarto-html/quarto.js"></script>
<script src="site_libs/quarto-html/popper.min.js"></script>
<script src="site_libs/quarto-html/tippy.umd.min.js"></script>
<link href="site_libs/quarto-html/tippy.css" rel="stylesheet">
<link href="site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
<script src="site_libs/bootstrap/bootstrap.min.js"></script>
<link href="site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
<link href="site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light">
<script id="quarto-search-options" type="application/json">{
"location": "navbar",
"copy-button": false,
"collapse-after": 3,
"panel-placement": "end",
"type": "overlay",
"limit": 20,
"language": {
"search-no-results-text": "No results",
"search-matching-documents-text": "matching documents",
"search-copy-link-title": "Copy link to search",
"search-hide-matches-text": "Hide additional matches",
"search-more-match-text": "more match in this document",
"search-more-matches-text": "more matches in this document",
"search-clear-button-title": "Clear",
"search-detached-cancel-button-title": "Cancel",
"search-submit-button-title": "Submit"
}
}</script>


<link rel="stylesheet" href="styles.css">
</head>

<body class="nav-fixed fullcontent">

<div id="quarto-search-results"></div>
<header id="quarto-header" class="headroom fixed-top">
<nav class="navbar navbar-expand-lg navbar-dark ">
<div class="navbar-container container-fluid">
<div class="navbar-brand-container">
<a href="./index.html" class="navbar-brand navbar-brand-logo">
<img src="./Bios2_reverse.png" alt="" class="navbar-logo">
</a>
<a class="navbar-brand" href="./index.html">
<span class="navbar-title">BIOS2 Education resources</span>
</a>
</div>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<span class="navbar-toggler-icon"></span>
</button>
<div class="collapse navbar-collapse" id="navbarCollapse">
<ul class="navbar-nav navbar-nav-scroll ms-auto">
<li class="nav-item">
<a class="nav-link" href="./index.html">
<span class="menu-text">Home</span></a>
</li>
<li class="nav-item dropdown ">
<a class="nav-link dropdown-toggle" href="#" id="nav-menu-biodiversity-modelling-summer-schools" role="button" data-bs-toggle="dropdown" aria-expanded="false">
<span class="menu-text">Biodiversity Modelling Summer Schools</span>
</a>
<ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-biodiversity-modelling-summer-schools">
<li>
<a class="dropdown-item" href="https://bios2.github.io/biodiversity_modelling_2021/">
<span class="dropdown-text">Biodiversity Modelling Summer School 2021</span></a>
</li>
<li>
<a class="dropdown-item" href="./summer-schools/BiodiversityModelling2022.html">
<span class="dropdown-text">Biodiversity Modelling Summer School 2022</span></a>
</li>
</ul>
</li>
<li class="nav-item">
<a class="nav-link" href="https://bios2.usherbrooke.ca/">
<span class="menu-text">About</span></a>
</li>
<li class="nav-item compact">
<a class="nav-link" href="https://github.com/bios2/bios2.github.io"><i class="bi bi-github" role="img">
</i>
<span class="menu-text"></span></a>
</li>
<li class="nav-item compact">
<a class="nav-link" href="https://twitter.com/_bios2"><i class="bi bi-twitter" role="img">
</i>
<span class="menu-text"></span></a>
</li>
</ul>
<div id="quarto-search" class="" title="Search"></div>
</div> <!-- /navcollapse -->
</div> <!-- /container-fluid -->
</nav>
</header>
<!-- content -->
<div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar">
<!-- sidebar -->
<!-- margin-sidebar -->

<!-- main -->
<div class="quarto-about-jolla">
<img src="profile.jpg" class="about-image
round " style="height: 15em; width: 15em;">
<header id="title-block-header" class="quarto-title-block default">
<div class="quarto-title">
<h1 class="title">About</h1>
</div>
<div class="quarto-title-meta">
</div>
</header><main class="content" id="quarto-document-content">
<p>About this blog</p>


</main>
<hr class="about-sep">
<div class="about-links">
<a href="https://twitter.com" class="about-link">
<i class="bi bi-twitter"></i>
<span class="about-link-text">Twitter</span>
</a>
<a href="https://linkedin.com" class="about-link">
<i class="bi bi-linkedin"></i>
<span class="about-link-text">LinkedIn</span>
</a>
<a href="https://github.com" class="about-link">
<i class="bi bi-github"></i>
<span class="about-link-text">Github</span>
</a>
</div>
</div>
<!-- /main -->
<script id="quarto-html-after-body" type="application/javascript">
window.document.addEventListener("DOMContentLoaded", function (event) {
const toggleBodyColorMode = (bsSheetEl) => {
const mode = bsSheetEl.getAttribute("data-mode");
const bodyEl = window.document.querySelector("body");
if (mode === "dark") {
bodyEl.classList.add("quarto-dark");
bodyEl.classList.remove("quarto-light");
} else {
bodyEl.classList.add("quarto-light");
bodyEl.classList.remove("quarto-dark");
}
}
const toggleBodyColorPrimary = () => {
const bsSheetEl = window.document.querySelector("link#quarto-bootstrap");
if (bsSheetEl) {
toggleBodyColorMode(bsSheetEl);
}
}
toggleBodyColorPrimary();
const clipboard = new window.ClipboardJS('.code-copy-button', {
target: function(trigger) {
return trigger.previousElementSibling;
}
});
clipboard.on('success', function(e) {
// button target
const button = e.trigger;
// don't keep focus
button.blur();
// flash "checked"
button.classList.add('code-copy-button-checked');
var currentTitle = button.getAttribute("title");
button.setAttribute("title", "Copied!");
let tooltip;
if (window.bootstrap) {
button.setAttribute("data-bs-toggle", "tooltip");
button.setAttribute("data-bs-placement", "left");
button.setAttribute("data-bs-title", "Copied!");
tooltip = new bootstrap.Tooltip(button,
{ trigger: "manual",
customClass: "code-copy-button-tooltip",
offset: [0, -8]});
tooltip.show();
}
setTimeout(function() {
if (tooltip) {
tooltip.hide();
button.removeAttribute("data-bs-title");
button.removeAttribute("data-bs-toggle");
button.removeAttribute("data-bs-placement");
}
button.setAttribute("title", currentTitle);
button.classList.remove('code-copy-button-checked');
}, 1000);
// clear code selection
e.clearSelection();
});
function tippyHover(el, contentFn) {
const config = {
allowHTML: true,
content: contentFn,
maxWidth: 500,
delay: 100,
arrow: false,
appendTo: function(el) {
return el.parentElement;
},
interactive: true,
interactiveBorder: 10,
theme: 'quarto',
placement: 'bottom-start'
};
window.tippy(el, config);
}
const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]');
for (var i=0; i<noterefs.length; i++) {
const ref = noterefs[i];
tippyHover(ref, function() {
// use id or data attribute instead here
let href = ref.getAttribute('data-footnote-href') || ref.getAttribute('href');
try { href = new URL(href).hash; } catch {}
const id = href.replace(/^#\/?/, "");
const note = window.document.getElementById(id);
return note.innerHTML;
});
}
const findCites = (el) => {
const parentEl = el.parentElement;
if (parentEl) {
const cites = parentEl.dataset.cites;
if (cites) {
return {
el,
cites: cites.split(' ')
};
} else {
return findCites(el.parentElement)
}
} else {
return undefined;
}
};
var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]');
for (var i=0; i<bibliorefs.length; i++) {
const ref = bibliorefs[i];
const citeInfo = findCites(ref);
if (citeInfo) {
tippyHover(citeInfo.el, function() {
var popup = window.document.createElement('div');
citeInfo.cites.forEach(function(cite) {
var citeDiv = window.document.createElement('div');
citeDiv.classList.add('hanging-indent');
citeDiv.classList.add('csl-entry');
var biblioDiv = window.document.getElementById('ref-' + cite);
if (biblioDiv) {
citeDiv.innerHTML = biblioDiv.innerHTML;
}
popup.appendChild(citeDiv);
});
return popup.innerHTML;
});
}
}
});
</script>
</div> <!-- /content -->



</body></html>
Loading

0 comments on commit 5fb7767

Please sign in to comment.