Fixed extra comma in gdtools COMPARE TABLE output header #368

barricklab · May 28, 2024 · 3b9d870 · 3b9d870
1 parent 7dd473f
commit 3b9d870
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/src/c/breseq/genome_diff.cpp b/src/c/breseq/genome_diff.cpp
@@ -4283,7 +4283,7 @@ void cGenomeDiff::write_table_file(
 
   // Output header line
   ofstream output_file(output_file_name.c_str());
-  output_file << quote << "type" << quote << separator;
+  output_file << quote << "type" << quote;
   for (vector<string>::iterator header_it = header_list.begin(); header_it != header_list.end(); header_it++)  {
     output_file << separator << quote << *header_it << quote;
   }

diff --git a/tests/gdtools_compare_7/expected.csv b/tests/gdtools_compare_7/expected.csv
@@ -1,4 +1,4 @@
-"type",,"seq_id","position","mutation","gd","gd_1","gd_2","annotation","gene","description"
+"type","seq_id","position","mutation","gd","gd_1","gd_2","annotation","gene","description"
 "DEL","NC_001416-0","139","Δ1 bp","?","1","1","intergenic (–/-52)","– / → nu1","–/DNA packaging protein"
 "INS","NC_001416-1","4566","+G","1","1","1","intergenic (+139/-10)","L → / → K","tail component/tail component"
 "SNP","NC_001416-2","1261","A→G","1","1","1","K338E (AAA→GAA)|noncoding (107/621 nt)","orf-401 →|orf206b ←","Tail fiber protein|"