amarinderthind
Follow
-
This RNAseq data analysis tutorial is created for educational purpose
-
EGFR-ap Public
EGFR-AP : Epidermal Growth Factor Receptor-Activity Predictor
Python UpdatedJan 21, 2025 -
CGRphylo Public
CGR package for phylogeny. Pipeline compare multiple whole genome sequences using alignment free approach Chaos Game Representation (CGR). CRG core function creates the frequencies object for each …
-
decontaminer Public
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced sample…
-
This plot is useful for the comparison of mutational load across the cancer types, with input data in 2 coulmns i.e cancer types and mutatonal load for each samples in specificed cancer type.
R UpdatedOct 1, 2024 -
SeuratExtend Public
Forked from huayc09/SeuratExtendR GNU General Public License v3.0 UpdatedJul 11, 2024 -
R script for conversion of phylip distance matrix to Mega distance matrix
R UpdatedNov 26, 2023 -
CancerGenomicsCourse_EMBL-EBI Public
Forked from cortes-ciriano-lab/CancerGenomicsCourse_EMBL-EBIUpdatedJul 25, 2023 -
training-material Public
Forked from galaxyproject/training-materialA collection of Galaxy-related training material
HTML MIT License UpdatedSep 5, 2022 -
-
-
-
-
NanoStringNCTools Public
Forked from Nanostring-Biostats/NanoStringNCToolsTools for NanoString Technologies nCounter Technology for reading RCC files into an ExpressionSet derived object, QC and normalization.
R UpdatedFeb 2, 2021 -
RankerGUI Public
R script used for the preparation of the initial input file, i.e. merging of various studies by logFC (LogFC),
-
ISOTOPE Public
Forked from comprna/ISOTOPEISOform-guided prediction of epiTOPEs in cancer
Python GNU General Public License v3.0 UpdatedOct 26, 2020 -
Methylation_Analysis Public
Forked from hamidghaedi/Methylation_AnalysisComprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis
R UpdatedOct 4, 2020 -
Intro-to-ChIPseq Public
Forked from hbctraining/Intro-to-ChIPseqIntro to ChIPseq using HPC
-
-
NanoNormIter Public
Forked from bhattacharya-a-bt/NanoNormIterPre-processing of NanoString normalization data, as described in "An approach for normalization and quality control for NanoString RNA expression data" (Bhattacharya and Hamilton et al, 2020)
R UpdatedAug 13, 2020 -
anamiR Public
Forked from titaiwangms/anamiRAn integrated analysis R package of miRNA and mRNA profiiling
R UpdatedJul 22, 2020 -
Somatic-ShortV Public
Forked from Sydney-Informatics-Hub/Somatic-ShortVShell GNU General Public License v3.0 UpdatedJul 14, 2020 -
DEBKS Public
Forked from yangence/DEBKSa tool to detect differentially expressed circular RNA
Python GNU General Public License v3.0 UpdatedJun 30, 2020 -
IntEREst Public
Forked from gacatag/IntEREstIntEREst: Intron Exon Retention Estimator
R UpdatedMar 2, 2020 -
CNAPE Public
Forked from WangLabHKUST/CNAPE[Source] CNAPE: A Software for Copy Number Alteration Prediction from Gene Expression in Human Cancers
R UpdatedJun 18, 2019