Fix docstring

aertslab · Jun 15, 2024 · 91b02a2 · 91b02a2
1 parent cfb95c2
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Showing 3 changed files with 4 additions and 5 deletions.
diff --git a/docs/api/io.md b/docs/api/io.md
@@ -1,6 +1,6 @@
 # Input/Output
 
-Importing of topics bed files (outputs from [pycistopic](https://pycistopic.readthedocs.io/en/latest/)) and consensus regions bed file into Anndata format for topic regression or classification.  
+Importing of topics bed files (outputs from [pycistopic](https://pycistopic.readthedocs.io/en/latest/)) and consensus regions bed file into Anndata format for topic regression or classification.
 Importing of bigwigs files and consensus region bed files into Anndata format for peak regression or classification.
 
 ```{eval-rst}
@@ -13,7 +13,6 @@ Importing of bigwigs files and consensus region bed files into Anndata format fo
 .. autosummary::
     :toctree: _autosummary
 
-    import_topics
+    import_bigwigs
     import_peaks
 ```
-
diff --git a/src/crested/pp/_filter.py b/src/crested/pp/_filter.py
@@ -21,7 +21,7 @@ def filter_regions_on_specificity(
 
     Example
     -------
-    >>> filtered_adata = filter_regions_on_specificity(
+    >>> filtered_adata = crested.pp.filter_regions_on_specificity(
     ...     adata,
     ...     gini_std_threshold=1.0,
     ... )

diff --git a/src/crested/pp/_normalization.py b/src/crested/pp/_normalization.py
@@ -26,7 +26,7 @@ def normalize_peaks(
 
     Example
     -------
-    >>> normalized_adata = normalize_peaks(
+    >>> crested.pp.normalize_peaks(
     ...     adata,
     ...     peak_threshold=0,
     ...     gini_std_threshold=2.0,