Apply ruff fixes to notebook

aertslab · Feb 14, 2025 · 81e22d8 · 81e22d8
1 parent 7734b73
commit 81e22d8
Showing 1 changed file with 4 additions and 8 deletions.
diff --git a/docs/tutorials/borzoi_atac_finetuning.ipynb b/docs/tutorials/borzoi_atac_finetuning.ipynb
@@ -32,12 +32,8 @@
     "import zipfile\n",
     "import tempfile\n",
     "\n",
-    "import numpy as np\n",
     "import pandas as pd\n",
-    "import anndata as ad\n",
-    "import tensorflow as tf\n",
     "import keras\n",
-    "import wandb\n",
     "import crested"
    ]
   },
@@ -123,7 +119,7 @@
     "adata = crested.import_bigwigs(\n",
     "    bigwigs_folder=bigwigs_folder,\n",
     "    regions_file=regions_file,\n",
-    "    target_region_width=1000, \n",
+    "    target_region_width=1000,\n",
     "    target=\"count\",\n",
     ")\n",
     "adata"
@@ -1534,7 +1530,7 @@
     "    config=config,\n",
     "    project_name=\"biccn_borzoi_atac\",\n",
     "    run_name=\"testrun\",\n",
-    "    logger=\"wandb\", \n",
+    "    logger=\"wandb\",\n",
     ")"
    ]
   },
@@ -2719,7 +2715,7 @@
    "outputs": [],
    "source": [
     "model_architecture = keras.models.load_model(\n",
-    "    \"biccn_borzoi_atac/testrun/checkpoints/03.keras\", compile=False \n",
+    "    \"biccn_borzoi_atac/testrun/checkpoints/03.keras\", compile=False\n",
     ")"
    ]
   },
@@ -2737,7 +2733,7 @@
     "    config=config,\n",
     "    project_name=\"biccn_borzoi_atac\",\n",
     "    run_name=\"testrun_ft\",\n",
-    "    logger=\"wandb\", \n",
+    "    logger=\"wandb\",\n",
     ")"
    ]
   },