deploy: 6eac519

UofUEpiBio · Jan 28, 2025 · 83181cd · 83181cd
1 parent fac8bc0
commit 83181cd
Show file tree

Hide file tree

Showing 69 changed files with 6 additions and 6 deletions.
diff --git a/epiworld_8hpp_source.html b/epiworld_8hpp_source.html
@@ -1940,7 +1940,7 @@
 <div class="line"><a name="l02245"></a><span class="lineno"> 2245</span>&#160;<span class="comment">        </span></div>
 <div class="line"><a name="l02246"></a><span class="lineno"> 2246</span>&#160;<span class="comment">        int tmp_nchar;</span></div>
 <div class="line"><a name="l02247"></a><span class="lineno"> 2247</span>&#160;<span class="comment">        </span></div>
-<div class="line"><a name="l02248"></a><span class="lineno"> 2248</span>&#160;<span class="comment">        if (n &lt; 1) {</span></div>
+<div class="line"><a name="l02248"></a><span class="lineno"> 2248</span>&#160;<span class="comment">        if (std::abs(n) &lt; 1) {</span></div>
 <div class="line"><a name="l02249"></a><span class="lineno"> 2249</span>&#160;<span class="comment">            // std::log10(&lt;1) will return negative number</span></div>
 <div class="line"><a name="l02250"></a><span class="lineno"> 2250</span>&#160;<span class="comment">            // std::log10(0) will return -inf and throw a runtime error</span></div>
 <div class="line"><a name="l02251"></a><span class="lineno"> 2251</span>&#160;<span class="comment">            tmp_nchar = 0;</span></div>
@@ -2014,7 +2014,7 @@
 <div class="line"><a name="l02321"></a><span class="lineno"> 2321</span>&#160;<span class="comment">    for (auto &amp; s : summ_stats)</span></div>
 <div class="line"><a name="l02322"></a><span class="lineno"> 2322</span>&#160;<span class="comment">    {</span></div>
 <div class="line"><a name="l02323"></a><span class="lineno"> 2323</span>&#160;<span class="comment">        int tmp_nchar;</span></div>
-<div class="line"><a name="l02324"></a><span class="lineno"> 2324</span>&#160;<span class="comment">        if (s &lt; 1) {</span></div>
+<div class="line"><a name="l02324"></a><span class="lineno"> 2324</span>&#160;<span class="comment">        if (std::abs(s) &lt; 1) {</span></div>
 <div class="line"><a name="l02325"></a><span class="lineno"> 2325</span>&#160;<span class="comment">            // std::log10(&lt;1) will return negative number</span></div>
 <div class="line"><a name="l02326"></a><span class="lineno"> 2326</span>&#160;<span class="comment">            // std::log10(0) will return -inf and throw a runtime error</span></div>
 <div class="line"><a name="l02327"></a><span class="lineno"> 2327</span>&#160;<span class="comment">            tmp_nchar = 0;</span></div>

diff --git a/latex/agent-meat-state_8hpp__dep__incl.pdf b/latex/agent-meat-state_8hpp__dep__incl.pdf
diff --git a/latex/agent-meat-state_8hpp__incl.pdf b/latex/agent-meat-state_8hpp__incl.pdf
diff --git a/latex/class_model__coll__graph.pdf b/latex/class_model__coll__graph.pdf
diff --git a/latex/class_model_diff_net__coll__graph.pdf b/latex/class_model_diff_net__coll__graph.pdf
diff --git a/latex/class_model_diff_net__inherit__graph.pdf b/latex/class_model_diff_net__inherit__graph.pdf
diff --git a/latex/class_model_s_e_i_r__coll__graph.pdf b/latex/class_model_s_e_i_r__coll__graph.pdf
diff --git a/latex/class_model_s_e_i_r__inherit__graph.pdf b/latex/class_model_s_e_i_r__inherit__graph.pdf
diff --git a/latex/class_model_s_e_i_r_c_o_n_n__coll__graph.pdf b/latex/class_model_s_e_i_r_c_o_n_n__coll__graph.pdf
diff --git a/latex/class_model_s_e_i_r_c_o_n_n__inherit__graph.pdf b/latex/class_model_s_e_i_r_c_o_n_n__inherit__graph.pdf
diff --git a/latex/class_model_s_e_i_r_d__coll__graph.pdf b/latex/class_model_s_e_i_r_d__coll__graph.pdf
diff --git a/latex/class_model_s_e_i_r_d__inherit__graph.pdf b/latex/class_model_s_e_i_r_d__inherit__graph.pdf
diff --git a/latex/class_model_s_e_i_r_d_c_o_n_n__coll__graph.pdf b/latex/class_model_s_e_i_r_d_c_o_n_n__coll__graph.pdf
diff --git a/latex/class_model_s_e_i_r_d_c_o_n_n__inherit__graph.pdf b/latex/class_model_s_e_i_r_d_c_o_n_n__inherit__graph.pdf
diff --git a/latex/class_model_s_e_i_r_mixing__coll__graph.pdf b/latex/class_model_s_e_i_r_mixing__coll__graph.pdf
diff --git a/latex/class_model_s_e_i_r_mixing__inherit__graph.pdf b/latex/class_model_s_e_i_r_mixing__inherit__graph.pdf
diff --git a/latex/class_model_s_i_r__coll__graph.pdf b/latex/class_model_s_i_r__coll__graph.pdf
diff --git a/latex/class_model_s_i_r__inherit__graph.pdf b/latex/class_model_s_i_r__inherit__graph.pdf
diff --git a/latex/class_model_s_i_r_c_o_n_n__coll__graph.pdf b/latex/class_model_s_i_r_c_o_n_n__coll__graph.pdf
diff --git a/latex/class_model_s_i_r_c_o_n_n__inherit__graph.pdf b/latex/class_model_s_i_r_c_o_n_n__inherit__graph.pdf
diff --git a/latex/class_model_s_i_r_d__coll__graph.pdf b/latex/class_model_s_i_r_d__coll__graph.pdf
diff --git a/latex/class_model_s_i_r_d__inherit__graph.pdf b/latex/class_model_s_i_r_d__inherit__graph.pdf
diff --git a/latex/class_model_s_i_r_d_c_o_n_n__coll__graph.pdf b/latex/class_model_s_i_r_d_c_o_n_n__coll__graph.pdf
diff --git a/latex/class_model_s_i_r_d_c_o_n_n__inherit__graph.pdf b/latex/class_model_s_i_r_d_c_o_n_n__inherit__graph.pdf
diff --git a/latex/class_model_s_i_r_logit__coll__graph.pdf b/latex/class_model_s_i_r_logit__coll__graph.pdf
diff --git a/latex/class_model_s_i_r_logit__inherit__graph.pdf b/latex/class_model_s_i_r_logit__inherit__graph.pdf
diff --git a/latex/class_model_s_i_r_mixing__coll__graph.pdf b/latex/class_model_s_i_r_mixing__coll__graph.pdf
diff --git a/latex/class_model_s_i_r_mixing__inherit__graph.pdf b/latex/class_model_s_i_r_mixing__inherit__graph.pdf
diff --git a/latex/class_model_s_i_s__coll__graph.pdf b/latex/class_model_s_i_s__coll__graph.pdf
diff --git a/latex/class_model_s_i_s__inherit__graph.pdf b/latex/class_model_s_i_s__inherit__graph.pdf
diff --git a/latex/class_model_s_i_s_d__coll__graph.pdf b/latex/class_model_s_i_s_d__coll__graph.pdf
diff --git a/latex/class_model_s_i_s_d__inherit__graph.pdf b/latex/class_model_s_i_s_d__inherit__graph.pdf
diff --git a/latex/class_model_s_u_r_v__coll__graph.pdf b/latex/class_model_s_u_r_v__coll__graph.pdf
diff --git a/latex/class_model_s_u_r_v__inherit__graph.pdf b/latex/class_model_s_u_r_v__inherit__graph.pdf
diff --git a/latex/classepiworld_1_1_model__coll__graph.pdf b/latex/classepiworld_1_1_model__coll__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_diff_net__coll__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_diff_net__coll__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_diff_net__inherit__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_diff_net__inherit__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r__coll__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r__coll__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r__inherit__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r__inherit__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r_c_o_n_n__coll__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r_c_o_n_n__coll__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r_c_o_n_n__inherit__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r_c_o_n_n__inherit__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r_d__coll__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r_d__coll__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r_d__inherit__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r_d__inherit__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r_d_c_o_n_n__coll__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r_d_c_o_n_n__coll__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r_d_c_o_n_n__inherit__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r_d_c_o_n_n__inherit__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r_mixing__coll__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r_mixing__coll__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r_mixing__inherit__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_e_i_r_mixing__inherit__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_i_r__coll__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_i_r__coll__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_i_r__inherit__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_i_r__inherit__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_c_o_n_n__coll__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_c_o_n_n__coll__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_c_o_n_n__inherit__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_c_o_n_n__inherit__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_d__coll__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_d__coll__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_d__inherit__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_d__inherit__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_d_c_o_n_n__coll__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_d_c_o_n_n__coll__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_d_c_o_n_n__inherit__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_d_c_o_n_n__inherit__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_logit__coll__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_logit__coll__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_logit__inherit__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_logit__inherit__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_mixing__coll__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_mixing__coll__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_mixing__inherit__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_i_r_mixing__inherit__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_i_s__coll__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_i_s__coll__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_i_s__inherit__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_i_s__inherit__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_i_s_d__coll__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_i_s_d__coll__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_i_s_d__inherit__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_i_s_d__inherit__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_u_r_v__coll__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_u_r_v__coll__graph.pdf
diff --git a/latex/classepiworld_1_1epimodels_1_1_model_s_u_r_v__inherit__graph.pdf b/latex/classepiworld_1_1epimodels_1_1_model_s_u_r_v__inherit__graph.pdf
diff --git a/latex/refman.log b/latex/refman.log
@@ -1,4 +1,4 @@
-This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Alpine Linux) (preloaded format=pdflatex 2025.1.28)  28 JAN 2025 18:33
+This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Alpine Linux) (preloaded format=pdflatex 2025.1.28)  28 JAN 2025 18:34
 entering extended mode
  restricted \write18 enabled.
  %&-line parsing enabled.
@@ -3900,7 +3900,7 @@ b></usr/share/texmf-dist/fonts/type1/urw/helvetic/uhvb8a.pfb></usr/share/texmf-
 dist/fonts/type1/urw/helvetic/uhvb8ac.pfb></usr/share/texmf-dist/fonts/type1/ur
 w/helvetic/uhvbo8ac.pfb></usr/share/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.
 pfb></usr/share/texmf-dist/fonts/type1/urw/helvetic/uhvro8a.pfb>
-Output written on refman.pdf (229 pages, 1107853 bytes).
+Output written on refman.pdf (229 pages, 1107801 bytes).
 PDF statistics:
  8374 PDF objects out of 8907 (max. 8388607)
  7733 compressed objects within 78 object streams

diff --git a/latex/refman.pdf b/latex/refman.pdf
diff --git a/latex/struct_event__coll__graph.pdf b/latex/struct_event__coll__graph.pdf
diff --git a/lfmcmc-meat-print_8hpp_source.html b/lfmcmc-meat-print_8hpp_source.html
@@ -165,7 +165,7 @@
 <div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;        </div>
 <div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;        <span class="keywordtype">int</span> tmp_nchar;</div>
 <div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;        </div>
-<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;        <span class="keywordflow">if</span> (n &lt; 1) {</div>
+<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;        <span class="keywordflow">if</span> (std::abs(n) &lt; 1) {</div>
 <div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;            <span class="comment">// std::log10(&lt;1) will return negative number</span></div>
 <div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;            <span class="comment">// std::log10(0) will return -inf and throw a runtime error</span></div>
 <div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;            tmp_nchar = 0;</div>
@@ -239,7 +239,7 @@
 <div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;    <span class="keywordflow">for</span> (<span class="keyword">auto</span> &amp; s : summ_stats)</div>
 <div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;    {</div>
 <div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;        <span class="keywordtype">int</span> tmp_nchar;</div>
-<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;        <span class="keywordflow">if</span> (s &lt; 1) {</div>
+<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;        <span class="keywordflow">if</span> (std::abs(s) &lt; 1) {</div>
 <div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;            <span class="comment">// std::log10(&lt;1) will return negative number</span></div>
 <div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;            <span class="comment">// std::log10(0) will return -inf and throw a runtime error</span></div>
 <div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;            tmp_nchar = 0;</div>