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UofUEpiBio · Dec 16, 2024 · 377c678 · 377c678
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diff --git a/class_model_s_e_i_r.html b/class_model_s_e_i_r.html
@@ -788,8 +788,8 @@ <h2 class="memtitle"><span class="permalink"><a href="#ac8fceb86169a04202b06aab7
 <div class="line">        <span class="keywordflow">return</span>;    </div>
 <div class="line">    }</div>
 <div class="ttc" id="aclass_model_s_e_i_r_html"><div class="ttname"><a href="class_model_s_e_i_r.html">ModelSEIR</a></div><div class="ttdoc">Template for a Susceptible-Exposed-Infected-Removed (SEIR) model.</div><div class="ttdef"><b>Definition:</b> seir.hpp:16</div></div>
-<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13748</div></div>
-<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6401</div></div>
+<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13755</div></div>
+<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6408</div></div>
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diff --git a/class_model_s_e_i_r_d.html b/class_model_s_e_i_r_d.html
@@ -892,8 +892,8 @@ <h2 class="memtitle"><span class="permalink"><a href="#a68a053ac9d069499381e44f7
 <div class="line">    <span class="keywordflow">return</span>;</div>
 <div class="line">  }</div>
 <div class="ttc" id="aclass_model_s_e_i_r_d_html"><div class="ttname"><a href="class_model_s_e_i_r_d.html">ModelSEIRD</a></div><div class="ttdoc">Template for a Susceptible-Exposed-Infected-Removed-Deceased (SEIRD) model.</div><div class="ttdef"><b>Definition:</b> seird.hpp:9</div></div>
-<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13748</div></div>
-<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6401</div></div>
+<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13755</div></div>
+<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6408</div></div>
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diff --git a/classepiworld_1_1_model.html b/classepiworld_1_1_model.html
@@ -494,7 +494,7 @@
 <div class="fragment"><div class="line">[<a class="code" href="classepiworld_1_1_model.html#a4af72bcd59626f5c6cb52fc10fc30c04">name</a> of parameter 1]: [value in double]</div>
 <div class="line">[<a class="code" href="classepiworld_1_1_model.html#a4af72bcd59626f5c6cb52fc10fc30c04">name</a> of parameter 2]: [value in double]</div>
 <div class="line">...</div>
-<div class="ttc" id="aclassepiworld_1_1_model_html_a4af72bcd59626f5c6cb52fc10fc30c04"><div class="ttname"><a href="classepiworld_1_1_model.html#a4af72bcd59626f5c6cb52fc10fc30c04">epiworld::Model::name</a></div><div class="ttdeci">std::string name</div><div class="ttdoc">Name of the model.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6408</div></div>
+<div class="ttc" id="aclassepiworld_1_1_model_html_a4af72bcd59626f5c6cb52fc10fc30c04"><div class="ttname"><a href="classepiworld_1_1_model.html#a4af72bcd59626f5c6cb52fc10fc30c04">epiworld::Model::name</a></div><div class="ttdeci">std::string name</div><div class="ttdoc">Name of the model.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6415</div></div>
 </div><!-- fragment --><p>The only condition for parameter names is that these do not include a colon.</p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">

diff --git a/classepiworld_1_1epimodels_1_1_model_s_e_i_r.html b/classepiworld_1_1epimodels_1_1_model_s_e_i_r.html
@@ -792,8 +792,8 @@ <h2 class="memtitle"><span class="permalink"><a href="#a4dd9da9e5a389e752cd11a43
 <div class="line">        <span class="keywordflow">return</span>;    </div>
 <div class="line">    }</div>
 <div class="ttc" id="aclass_model_s_e_i_r_html"><div class="ttname"><a href="class_model_s_e_i_r.html">ModelSEIR</a></div><div class="ttdoc">Template for a Susceptible-Exposed-Infected-Removed (SEIR) model.</div><div class="ttdef"><b>Definition:</b> seir.hpp:16</div></div>
-<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13748</div></div>
-<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6401</div></div>
+<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13755</div></div>
+<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6408</div></div>
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diff --git a/classepiworld_1_1epimodels_1_1_model_s_e_i_r_d.html b/classepiworld_1_1epimodels_1_1_model_s_e_i_r_d.html
@@ -896,8 +896,8 @@ <h2 class="memtitle"><span class="permalink"><a href="#a5e0e593ef79ce52a315469c6
 <div class="line">    <span class="keywordflow">return</span>;</div>
 <div class="line">  }</div>
 <div class="ttc" id="aclass_model_s_e_i_r_d_html"><div class="ttname"><a href="class_model_s_e_i_r_d.html">ModelSEIRD</a></div><div class="ttdoc">Template for a Susceptible-Exposed-Infected-Removed-Deceased (SEIRD) model.</div><div class="ttdef"><b>Definition:</b> seird.hpp:9</div></div>
-<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13748</div></div>
-<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6401</div></div>
+<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13755</div></div>
+<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6408</div></div>
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diff --git a/diffnet_8hpp_source.html b/diffnet_8hpp_source.html
@@ -273,10 +273,10 @@
 <div class="line"><a name="l00210"></a><span class="lineno">  210</span>&#160;<span class="preprocessor">#endif</span></div>
 <div class="ttc" id="aclass_agent_html"><div class="ttname"><a href="class_agent.html">Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> agent-bones.hpp:66</div></div>
 <div class="ttc" id="aclass_model_diff_net_html"><div class="ttname"><a href="class_model_diff_net.html">ModelDiffNet</a></div><div class="ttdoc">Template for a Network Diffusion Model.</div><div class="ttdef"><b>Definition:</b> diffnet.hpp:15</div></div>
-<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13748</div></div>
-<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6401</div></div>
-<div class="ttc" id="aclassepiworld_1_1_model_html_ab7d63eb898445d3d30167c14ddec0c3d"><div class="ttname"><a href="classepiworld_1_1_model.html#ab7d63eb898445d3d30167c14ddec0c3d">epiworld::Model::get_n_viruses</a></div><div class="ttdeci">size_t get_n_viruses() const</div><div class="ttdoc">Number of viruses in the model.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:8703</div></div>
-<div class="ttc" id="aclassepiworld_1_1_virus_html"><div class="ttname"><a href="classepiworld_1_1_virus.html">epiworld::Virus</a></div><div class="ttdoc">Virus.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:10210</div></div>
+<div class="ttc" id="aclassepiworld_1_1_agent_html"><div class="ttname"><a href="classepiworld_1_1_agent.html">epiworld::Agent</a></div><div class="ttdoc">Agent (agents)</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:13755</div></div>
+<div class="ttc" id="aclassepiworld_1_1_model_html"><div class="ttname"><a href="classepiworld_1_1_model.html">epiworld::Model</a></div><div class="ttdoc">Core class of epiworld.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:6408</div></div>
+<div class="ttc" id="aclassepiworld_1_1_model_html_ab7d63eb898445d3d30167c14ddec0c3d"><div class="ttname"><a href="classepiworld_1_1_model.html#ab7d63eb898445d3d30167c14ddec0c3d">epiworld::Model::get_n_viruses</a></div><div class="ttdeci">size_t get_n_viruses() const</div><div class="ttdoc">Number of viruses in the model.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:8710</div></div>
+<div class="ttc" id="aclassepiworld_1_1_virus_html"><div class="ttname"><a href="classepiworld_1_1_virus.html">epiworld::Virus</a></div><div class="ttdoc">Virus.</div><div class="ttdef"><b>Definition:</b> epiworld.hpp:10217</div></div>
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