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It performs a search on PubMed looking for the <a
href="https://pubmed.ncbi.nlm.nih.gov/?term=agent-based+model&amp;sort=date"
target="_blank">latest papers about Agent-Based Models</a>. The last
update was on 2025-02-09 00:50:29.
update was on 2025-02-16 00:52:04.

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1. [**Timing matters in macrophage/CD4+ T cell interactions: an
agent-based model comparing Mycobacterium tuberculosis host-pathogen
interactions between latently infected and naive
individuals.**](https://pubmed.ncbi.nlm.nih.gov/39918314/)
1. [**Increasing child vaccination coverage can reduce influenza cases
across age groups: An agent-based modeling
study.**](https://pubmed.ncbi.nlm.nih.gov/39952478/)

Hoerter A, Petrucciani A, Bonifacio J, Arnett E, Schlesinger LS,
Pienaar E.
Williams KV, Krauland MG, Nowalk MP, Harrison LH, Williams JV,
Roberts MS, Zimmerman RK.

mSystems. 2025 Feb 7:e0129024. doi: 10.1128/msystems.01290-24.
J Infect. 2025 Feb 12:106443. doi: 10.1016/j.jinf.2025.106443.
Online ahead of print.

> However, the mechanisms by which LTBI might offer protection
> against reinfection remain unclear, and quantifying the relative
> contributions of multiple control mechanisms is challenging using
> experimental methods alone. To complement in vitro models, we have
> developed an i …
> Direct and indirect benefits (decreased influenza cases and
> hospitalizations) of increased uptake among school-age children
> may be realized across the age spectrum. We used an agent-based
> model to determine the extent to which increased vaccination of
> childre …
2. [**Urban topology and dynamics can assess the importance of green
areas.**](https://pubmed.ncbi.nlm.nih.gov/39916249/)
2. [**Developing a Conceptual Model for Collective Patterns and
Leisure-Time Physical Activity Inequalities Among
Adults.**](https://pubmed.ncbi.nlm.nih.gov/39952255/)

Moi J, Chiesi L, Chirici G, Francini S, Borghi C, Costa P, Galmarini
B, Caldarelli G.
Jones SM, Hunter RF, Garcia L.

Phys Rev E. 2024 Dec;110(6-1):064128. doi:
10.1103/PhysRevE.110.064128.
J Phys Act Health. 2025 Feb 14:1-8. doi: 10.1123/jpah.2024-0721.
Online ahead of print.

> Here we present a method to estimate the impact of these areas on
> city life based on the network topology of the city itself and on
> a simple model of the dynamics of this structure. Movements
> between various areas of the city are simulated using an
> agent-based …
> RESULTS: The conceptual model has intention as its central
> construct to practice LTPA, and intention is directly influenced
> by dynamic interrelated processes between individual’s economic,
> psychosocial, and perceived physical environment factors. …Going
> forward, this wor …
3. [**Simulations probe the role of space in the interplay between
drug-sensitive and drug-resistant cancer
cells.**](https://pubmed.ncbi.nlm.nih.gov/39914489/)
3. [**Agent-based modelling: A stochastic approach to assessing
personal exposure to environmental pollutants - Insights from the
URBANOME project.**](https://pubmed.ncbi.nlm.nih.gov/39952215/)

Pugh K, Jones RD, Powathil G, Hamis S.
Karakoltzidis A, Agalliadou A, Kermenidou M, Nikiforou F,
Chatzimpaloglou A, Feleki E, Karakitsios S, Gotti A, Sarigiannis DΑ.

J Theor Biol. 2025 Feb 4:112048. doi: 10.1016/j.jtbi.2025.112048.
Online ahead of print.
Sci Total Environ. 2025 Feb 13;967:178804. doi:
10.1016/j.scitotenv.2025.178804. Online ahead of print.

> Our baseline models are: (1) a temporally resolved ordinary
> differential equation (ODE) model, and (2) a spatio-temporally
> resolved agent-based model (ABM). The models simulate cells in
> well-mixed and spatially structured cell systems, re …
> By leveraging socioeconomic and socio-demographic statistical data
> for the residents of Thessaloniki, we developed an agent-based
> model to estimate exposure levels based on the movement patterns,
> locations, and data collected from the URBANOME campaign. …Th …
4. [**Liquid-like condensates that bind actin promote assembly and
bundling of actin
filaments.**](https://pubmed.ncbi.nlm.nih.gov/39914390/)
4. [**Impact of disease severity, age, sex, comorbidity, and
vaccination on secondary attack rates of SARS-CoV-2: a global
systematic review and
meta-analysis.**](https://pubmed.ncbi.nlm.nih.gov/39948450/)

Walker C, Chandrasekaran A, Mansour D, Graham K, Torres A, Wang L,
Lafer EM, Rangamani P, Stachowiak JC.
Sumsuzzman DM, Ye Y, Wang Z, Pandey A, Langley JM, Galvani AP,
Moghadas SM.

Dev Cell. 2025 Feb 4:S1534-5807(25)00032-2. doi:
10.1016/j.devcel.2025.01.012. Online ahead of print.
BMC Infect Dis. 2025 Feb 13;25(1):215. doi:
10.1186/s12879-025-10610-5.

> To probe the minimum requirements for condensate-mediated actin
> bundling, we developed an agent-based computational model. Guided
> by its predictions, we hypothesized that any condensate-forming
> protein that binds filamentous actin could bundle filaments throu
> …
> We pooled SAR estimates using a random-effects model with the
> Freeman-Tukey double arcsine transformation and derived
> Clopper-Pearson 95% confidence intervals (CIs). …
5. [**Modeling the spatiotemporal transmission of COVID-19 epidemic by
coupling the heterogeneous impact of detection rates: A case study
in Hong Kong.**](https://pubmed.ncbi.nlm.nih.gov/39914091/)
5. [**Growth in a two-dimensional model of coarctation of the aorta: A
CFD-informed agent based
model.**](https://pubmed.ncbi.nlm.nih.gov/39946822/)

He J, Liu X, Zhu X, Yuan HY, Chen W.
Hampwaye N, Wang J, Revell A, Manchester E, Aldersley T, Zuhlke L,
Keavney B, Ngoepe M.

Health Place. 2025 Feb 5;92:103422. doi:
10.1016/j.healthplace.2025.103422. Online ahead of print.
J Biomech. 2025 Jan 4;182:112514. doi:
10.1016/j.jbiomech.2025.112514. Online ahead of print.

> Coupling the heterogeneous impact of detection rates to extend
> epidemic modeling is necessary for forecasting the health burden
> and mitigating the inequity of testing resources. In this study,
> we developed an agent-based model integrated with the Susce …
> This progression can be attributed to insufficient growth at the
> coarctation site relative to the overall growth of the child.
> Therefore, an agent-based model (ABM) to predict the aortic growth
> of a CoA patient is introduced. The multi-scale approach combines
> …
6. [**Digital twin-based applications in crop
monitoring.**](https://pubmed.ncbi.nlm.nih.gov/39911426/)
6. [**Estimating nosocomial transmission of micro-organisms in hospital
settings using patient records and culture
data.**](https://pubmed.ncbi.nlm.nih.gov/39946776/)

Melesse TY.
Cascante Vega J, Yaari R, Robin T, Wen L, Zucker J, Uhlemann AC, Pei
S, Shaman J.

Heliyon. 2025 Jan 21;11(2):e42137. doi:
10.1016/j.heliyon.2025.e42137. eCollection 2025 Jan 30.
Epidemics. 2025 Jan 25;50:100817. doi: 10.1016/j.epidem.2025.100817.
Online ahead of print.

> This article explores the use of digital twins in crop management,
> focusing on modeling methodologies, roles, implementation
> architecture, challenges, and prospects. The review identifies
> various modeling methods for digital twin development in crop
> monitoring, incl …
> Here we leverage electronic health records from a major New York
> City hospital system collected during 2020-2021 to support
> simulation inference of nosocomial transmission and pathogenic
> bacteria detection using an agent-based model (ABM). The ABM uses
> these …
7. [**Premises for digital twins reporting on Atlantic salmon
wellbeing.**](https://pubmed.ncbi.nlm.nih.gov/39909180/)
7. [**Leveraging Large Language Models and Agent-Based Systems for
Scientific Data Analysis: Validation
Study.**](https://pubmed.ncbi.nlm.nih.gov/39946556/)

Giske J, Dumitru ML, Enberg K, Folkedal O, Handeland SO, Higginson
AD, Opdal AF, Rønnestad I, Salvanes AGV, Vollset KW, Zennaro FM,
Mangel M, Budaev S.
Peasley D, Kuplicki R, Sen S, Paulus M.

Behav Processes. 2025 Feb 3:105163. doi:
10.1016/j.beproc.2025.105163. Online ahead of print.
JMIR Ment Health. 2025 Feb 13;12:e68135. doi: 10.2196/68135.

> We propose a new approach for monitoring and improving the welfare
> of salmon (or any other captive or wild vertebrate) based on
> modelling the salmon’s wellbeing system by digital twins, which
> are simulation models that implement major bodily mechanisms of
> the organi …
> The Laureate Institute for Brain Research-Tulsa University
> (LIBR-TU) Research Agent (LITURAt) leverages a sophisticated
> agent-based architecture to mitigate these limitations, using
> external data retrieval and analysis tools to ensure reliable,
> context-aware outputs …
8. [**Climate change rivals fertilizer use in driving soil nitrous
oxide emissions in the northern high latitudes: Insights from
terrestrial biosphere
models.**](https://pubmed.ncbi.nlm.nih.gov/39908694/)
8. [**Hybrid metapopulation agent-based epidemiological models for
efficient insight on the individual scale: A contribution to green
computing.**](https://pubmed.ncbi.nlm.nih.gov/39944375/)

Pan N, Tian H, Shi H, Pan S, Canadell JG, Chang J, Ciais P, Davidson
EA, Hugelius G, Ito A, Jackson RB, Joos F, Lienert S, Millet DB,
Olin S, Patra PK, Thompson RL, Vuichard N, Wells KC, Wilson C, You
Y, Zaehle S.
Bicker J, Schmieding R, Meyer-Hermann M, Kühn MJ.

Environ Int. 2025 Jan 21;196:109297. doi:
10.1016/j.envint.2025.109297. Online ahead of print.
Infect Dis Model. 2025 Jan 10;10(2):571-590. doi:
10.1016/j.idm.2024.12.015. eCollection 2025 Jun.

> Nitrous oxide (N(2)O) is the most important stratospheric
> ozone-depleting agent based on current emissions and the third
> largest contributor to increased net radiative forcing. …In this
> study, we used an ensemble of six process-based terrestrial
> biosphere model …
> Two popular modeling approaches for mitigating infectious disease
> dynamics are agent-based and population-based models. Agent-based
> models (ABMs) offer a microscopic view and are thus able to
> capture heterogeneous human contact beh …
9. [**Cloud and IoT based smart agent-driven simulation of human gait
for detecting muscles
disorder.**](https://pubmed.ncbi.nlm.nih.gov/39906796/)
9. [**Mitigating HIV risk associated with widow cleansing and wife
inheritance using combined biomedical and structural interventions
in western Kenya: a mathematical modeling
study.**](https://pubmed.ncbi.nlm.nih.gov/39940027/)

Saadati S, Sepahvand A, Razzazi M.
Gathungu DK, Ojiambo VN, Kimathi ME, Kaftan D, Kim HY, Citron DT,
Platais I, Briedenbecker D, Kirkman C 4th, Mwalili SM, Bershteyn A.

Heliyon. 2025 Jan 20;11(2):e42119. doi:
10.1016/j.heliyon.2025.e42119. eCollection 2025 Jan 30.
BMC Med. 2025 Feb 12;23(1):88. doi: 10.1186/s12916-025-03906-5.

> The motion data is then simulated to analyze the
> neuromusculoskeletal system. An agent-driven modeling method
> ensures the naturalness, accuracy, and interpretability of the
> simulation, incorporating neuromuscular details such as Henneman’s
> size principle, action potentials …
> This study explores how HIV biomedical and structural
> interventions could reduce HIV-related harms associated with these
> practices. METHODS: We adapted EMOD-HIV, an HIV agent-based
> network transmission model previously calibrated and validated for
> the Nyanza …
10. [**Identifying Research Hotspots and Trends in Psoriasis Literature:
Autotuned Topic Modeling with
Agent.**](https://pubmed.ncbi.nlm.nih.gov/39894203/)
10. [**Estimated contributions and future mitigation strategies for HIV
risk around funeral practices in western Kenya: a mathematical
modeling study.**](https://pubmed.ncbi.nlm.nih.gov/39939974/)

Wu S, Wang D, Gu X, Xiao R, Gao H, Yang B, Kang Y.
Mwalili SM, Gathungu DK, Chemutai J, Musyoka E, Bridenbecker D,
Kirkman C 4th, Kaftan D, Kim HY, Platais I, Bershteyn A.

J Invest Dermatol. 2025 Jan 31:S0022-202X(25)00086-7. doi:
10.1016/j.jid.2024.11.029. Online ahead of print.
BMC Med. 2025 Feb 12;23(1):85. doi: 10.1186/s12916-025-03907-4.

> Further trend analysis using multiple modeling techniques,
> including an SVR-Linear model, revealed non-linear patterns in
> research growth across categories (R(2) values 0.75-0.97). …To our
> knowledge, this application of an agent-based interactive top …
> However, the contribution of disco matanga to HIV transmission is
> not well-understood. We used agent-based network modeling to
> estimate how disco matanga impacted HIV transmission, and to
> explore the impact of relevant biomedical, biobehavioral, and
> structura …
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