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Latest papers on Agent-Based Modeling in PubMed

This repository is an Example using GitHub Actions [egga] for the Advanced Programming with R class. The project consists of a quarto document updated once a week or whenever there’s a push or pull request. It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last update was on 2025-02-16 00:52:04.

  1. Increasing child vaccination coverage can reduce influenza cases across age groups: An agent-based modeling study.

    Williams KV, Krauland MG, Nowalk MP, Harrison LH, Williams JV, Roberts MS, Zimmerman RK.

    J Infect. 2025 Feb 12:106443. doi: 10.1016/j.jinf.2025.106443. Online ahead of print.

    Direct and indirect benefits (decreased influenza cases and hospitalizations) of increased uptake among school-age children may be realized across the age spectrum. We used an agent-based model to determine the extent to which increased vaccination of childre …

  2. Developing a Conceptual Model for Collective Patterns and Leisure-Time Physical Activity Inequalities Among Adults.

    Jones SM, Hunter RF, Garcia L.

    J Phys Act Health. 2025 Feb 14:1-8. doi: 10.1123/jpah.2024-0721. Online ahead of print.

    RESULTS: The conceptual model has intention as its central construct to practice LTPA, and intention is directly influenced by dynamic interrelated processes between individual’s economic, psychosocial, and perceived physical environment factors. …Going forward, this wor …

  3. Agent-based modelling: A stochastic approach to assessing personal exposure to environmental pollutants - Insights from the URBANOME project.

    Karakoltzidis A, Agalliadou A, Kermenidou M, Nikiforou F, Chatzimpaloglou A, Feleki E, Karakitsios S, Gotti A, Sarigiannis DΑ.

    Sci Total Environ. 2025 Feb 13;967:178804. doi: 10.1016/j.scitotenv.2025.178804. Online ahead of print.

    By leveraging socioeconomic and socio-demographic statistical data for the residents of Thessaloniki, we developed an agent-based model to estimate exposure levels based on the movement patterns, locations, and data collected from the URBANOME campaign. …Th …

  4. Impact of disease severity, age, sex, comorbidity, and vaccination on secondary attack rates of SARS-CoV-2: a global systematic review and meta-analysis.

    Sumsuzzman DM, Ye Y, Wang Z, Pandey A, Langley JM, Galvani AP, Moghadas SM.

    BMC Infect Dis. 2025 Feb 13;25(1):215. doi: 10.1186/s12879-025-10610-5.

    We pooled SAR estimates using a random-effects model with the Freeman-Tukey double arcsine transformation and derived Clopper-Pearson 95% confidence intervals (CIs). …

  5. Growth in a two-dimensional model of coarctation of the aorta: A CFD-informed agent based model.

    Hampwaye N, Wang J, Revell A, Manchester E, Aldersley T, Zuhlke L, Keavney B, Ngoepe M.

    J Biomech. 2025 Jan 4;182:112514. doi: 10.1016/j.jbiomech.2025.112514. Online ahead of print.

    This progression can be attributed to insufficient growth at the coarctation site relative to the overall growth of the child. Therefore, an agent-based model (ABM) to predict the aortic growth of a CoA patient is introduced. The multi-scale approach combines …

  6. Estimating nosocomial transmission of micro-organisms in hospital settings using patient records and culture data.

    Cascante Vega J, Yaari R, Robin T, Wen L, Zucker J, Uhlemann AC, Pei S, Shaman J.

    Epidemics. 2025 Jan 25;50:100817. doi: 10.1016/j.epidem.2025.100817. Online ahead of print.

    Here we leverage electronic health records from a major New York City hospital system collected during 2020-2021 to support simulation inference of nosocomial transmission and pathogenic bacteria detection using an agent-based model (ABM). The ABM uses these …

  7. Leveraging Large Language Models and Agent-Based Systems for Scientific Data Analysis: Validation Study.

    Peasley D, Kuplicki R, Sen S, Paulus M.

    JMIR Ment Health. 2025 Feb 13;12:e68135. doi: 10.2196/68135.

    The Laureate Institute for Brain Research-Tulsa University (LIBR-TU) Research Agent (LITURAt) leverages a sophisticated agent-based architecture to mitigate these limitations, using external data retrieval and analysis tools to ensure reliable, context-aware outputs …

  8. Hybrid metapopulation agent-based epidemiological models for efficient insight on the individual scale: A contribution to green computing.

    Bicker J, Schmieding R, Meyer-Hermann M, Kühn MJ.

    Infect Dis Model. 2025 Jan 10;10(2):571-590. doi: 10.1016/j.idm.2024.12.015. eCollection 2025 Jun.

    Two popular modeling approaches for mitigating infectious disease dynamics are agent-based and population-based models. Agent-based models (ABMs) offer a microscopic view and are thus able to capture heterogeneous human contact beh …

  9. Mitigating HIV risk associated with widow cleansing and wife inheritance using combined biomedical and structural interventions in western Kenya: a mathematical modeling study.

    Gathungu DK, Ojiambo VN, Kimathi ME, Kaftan D, Kim HY, Citron DT, Platais I, Briedenbecker D, Kirkman C 4th, Mwalili SM, Bershteyn A.

    BMC Med. 2025 Feb 12;23(1):88. doi: 10.1186/s12916-025-03906-5.

    This study explores how HIV biomedical and structural interventions could reduce HIV-related harms associated with these practices. METHODS: We adapted EMOD-HIV, an HIV agent-based network transmission model previously calibrated and validated for the Nyanza …

  10. Estimated contributions and future mitigation strategies for HIV risk around funeral practices in western Kenya: a mathematical modeling study.

    Mwalili SM, Gathungu DK, Chemutai J, Musyoka E, Bridenbecker D, Kirkman C 4th, Kaftan D, Kim HY, Platais I, Bershteyn A.

    BMC Med. 2025 Feb 12;23(1):85. doi: 10.1186/s12916-025-03907-4.

    However, the contribution of disco matanga to HIV transmission is not well-understood. We used agent-based network modeling to estimate how disco matanga impacted HIV transmission, and to explore the impact of relevant biomedical, biobehavioral, and structura …

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