Merge branch 'develop' into enhance-torch-compile

.github/workflows/mypy-type-check.yml

@@ -12,7 +12,7 @@ jobs:
 
   build:
 
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-24.04
 
     strategy:
       matrix:

.github/workflows/pip-install.yml

@@ -13,7 +13,7 @@ jobs:
       fail-fast: true
       matrix:
         python-version: ["3.9", "3.10", "3.11", "3.12"]
-        os: [ubuntu-22.04, windows-latest, macos-latest]
+        os: [ubuntu-24.04, windows-latest, macos-latest]
     steps:
     - name: Set up Python ${{ matrix.python-version }}
       uses: actions/setup-python@v3

.github/workflows/python-package.yml

@@ -13,7 +13,7 @@ on:
 jobs:
   build:
 
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-24.04
     strategy:
       fail-fast: true
       matrix:
@@ -30,7 +30,7 @@ jobs:
         sudo apt update
         sudo apt-get install -y libopenslide-dev openslide-tools libopenjp2-7 libopenjp2-tools
         python -m pip install --upgrade pip
-        python -m pip install ruff==0.6.2 pytest pytest-cov pytest-runner
+        python -m pip install ruff==0.6.5 pytest pytest-cov pytest-runner
         pip install -r requirements/requirements.txt
     - name: Cache tiatoolbox static assets
       uses: actions/cache@v3
@@ -80,7 +80,7 @@ jobs:
         fail-ci-on-error: false
 
   release:
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-24.04
     timeout-minutes: 15
     needs: build
     if: github.ref == 'refs/heads/master' || github.ref == 'refs/heads/main' || github.ref == 'refs/heads/pre-release' || startsWith(github.ref, 'refs/tags/v')

.pre-commit-config.yaml

@@ -60,7 +60,7 @@ repos:
       - id: rst-inline-touching-normal # Detect mistake of inline code touching normal text in rst.
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.6.2
+    rev: v0.6.5
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]

.readthedocs.yml

@@ -7,7 +7,7 @@ version: 2
 
 # Set the version of Python and other tools you might need
 build:
-  os: ubuntu-22.04
+  os: ubuntu-24.04
   tools:
     python: "3.10"
   apt_packages:
@@ -19,10 +19,6 @@ build:
 sphinx:
   configuration: docs/conf.py
 
-# Optionally build your docs in additional formats such as PDF
-formats:
-  - pdf
-
 # Optionally set the version of Python and requirements required to build your docs
 python:
   install:

requirements/requirements.txt

@@ -7,7 +7,7 @@ defusedxml>=0.7.1
 filelock>=3.9.0
 flask>=2.2.2
 flask-cors>=4.0.0
-glymur>=0.12.1, ~=0.12.6 # 0.12.6 is incompatible due to a private attribute
+glymur>=0.12.7
 imagecodecs>=2022.9.26
 joblib>=1.1.1
 jupyterlab>=3.5.2

requirements/requirements_dev.txt

@@ -2,7 +2,6 @@
 -r ../docs/requirements.txt
 coverage>=7.0.0
 docutils>=0.18.1
-jinja2>=3.0.3, <3.1.0
 mypy>=1.6.1
 pip>=22.3
 poetry-bumpversion>=0.3.1
@@ -11,7 +10,7 @@ pytest>=7.2.0
 pytest-cov>=4.0.0
 pytest-runner>=6.0
 pytest-xdist[psutil]
-ruff==0.6.2  # This will be updated by pre-commit bot to latest version
+ruff==0.6.5  # This will be updated by pre-commit bot to latest version
 toml>=0.10.2
 twine>=4.0.1
 wheel>=0.37.1