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Merge branch 'develop' into bug-fix-numpy-upgrade
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shaneahmed authored Nov 20, 2024
2 parents e3b4b0c + 32cae0b commit 30713d9
Showing 25 changed files with 4,958 additions and 4,270 deletions.
4 changes: 2 additions & 2 deletions .github/workflows/python-package.yml
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@@ -30,7 +30,7 @@ jobs:
sudo apt update
sudo apt-get install -y libopenslide-dev openslide-tools libopenjp2-7 libopenjp2-tools
python -m pip install --upgrade pip
python -m pip install ruff==0.7.0 pytest pytest-cov pytest-runner
python -m pip install ruff==0.7.4 pytest pytest-cov pytest-runner
pip install -r requirements/requirements.txt
- name: Cache tiatoolbox static assets
uses: actions/cache@v3
@@ -58,7 +58,7 @@ jobs:
- name: Test with pytest
run: |
pytest --basetemp={envtmpdir} \
--cov=tiatoolbox --cov-report=term --cov-report=xml \
--cov=tiatoolbox --cov-report=term --cov-report=xml --cov-config=pyproject.toml \
--capture=sys \
--durations=10 --durations-min=1.0 \
--maxfail=1
2 changes: 1 addition & 1 deletion .pre-commit-config.yaml
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@@ -60,7 +60,7 @@ repos:
- id: rst-inline-touching-normal # Detect mistake of inline code touching normal text in rst.
- repo: https://github.com/astral-sh/ruff-pre-commit
# Ruff version.
rev: v0.7.0
rev: v0.7.4
hooks:
- id: ruff
args: [--fix, --exit-non-zero-on-fix]
86 changes: 57 additions & 29 deletions examples/03-tissue-masking.ipynb

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