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@sgillies sgillies released this 21 Oct 22:38
· 21 commits to main since this release
v0.12.29
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Bio-imaging and SOMA ingestion improvements

Finer control over the resources used to run UDFs during Bio-imaging and SOMA data ingestion, and full support for ingesting folders of multiple H5ad files are highlights of this release.

The Bio-imaging, SOMA, and VCF ingestion entry points now all take an ingest_resources argument. Its value is the same as the existing resources argument. The new ingest_resources argument isn't consumed by task graph construction and is propagated to the most resource-intensive tasks of ingestion graphs.

The previous version of this package allowed ingestion of single H5ad files. Now, folders of multiple files can be ingested by passing the URI of the folder and a pattern argument, such as *.h5ad, that matches only H5ad files in the folder.

What's Changed

  • Adding PNG support and enabling experimental reader in kwargs by @ktsitsi in #654
  • Add Panel dashboard wrapper for Voila by @gspowley in #667
  • Add a tag name check for releases and some words about releases by @sgillies in #668
  • Propagate resources to ingest_h5ad node by @sgillies in #669
  • Skip sub-folders and make pattern matching more useful by @sgillies in #670
  • Add ingest_resources for use with UI by @sgillies in #671
  • Remove value registration wrappers by @sgillies in #672
  • Tests have been xpass-ing, no longer need xfail marks by @sgillies in #673

Full Changelog: v0.12.28...v0.12.29

Contributors

sgillies, gspowley, and ktsitsi
Assets 2
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