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Fix typo
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Hopefully mSphere fixes it in the published version soon too
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kelly-sovacool committed Feb 3, 2022
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2 changes: 1 addition & 1 deletion paper/paper.Rmd
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Expand Up @@ -229,7 +229,7 @@ Sequence pairs that are similar to each other (i.e. within the distance
threshold) are counted as true positives if they are clustered into the same OTU,
and false negatives if they are not in the the same OTU.
Sequence pairs that are not similar to each other are true negatives if they are
not clustered into the same OTU, and false positives if they are not in the same
not clustered into the same OTU, and false positives if they are in the same
OTU.
Thus, a pair of sequences is considered correctly assigned when their OTU
assignment matches the OTU definition set by the distance threshold.
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4 changes: 2 additions & 2 deletions paper/paper.md
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@@ -1,7 +1,7 @@
OptiFit: an improved method for fitting amplicon sequences to existing
OTUs
================
2022-01-18
2022-02-03

## Abstract

Expand Down Expand Up @@ -154,7 +154,7 @@ the distance threshold) are counted as true positives if they are
clustered into the same OTU, and false negatives if they are not in the
the same OTU. Sequence pairs that are not similar to each other are true
negatives if they are not clustered into the same OTU, and false
positives if they are not in the same OTU. Thus, a pair of sequences is
positives if they are in the same OTU. Thus, a pair of sequences is
considered correctly assigned when their OTU assignment matches the OTU
definition set by the distance threshold. OptiClust iterations continue
until the MCC stabilizes or until a maximum number of iterations is
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