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Handle recursionlimit error dynamically #207

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314e1d2
generated geojson outputs by default in wsinfer run command
swaradgat19 Aug 12, 2023
0146268
Merge branch 'SBU-BMI:main' into main
swaradgat19 Aug 14, 2023
b9b6244
generating geojson files on run command, parallelized geojson convert…
swaradgat19 Aug 14, 2023
afde53f
changed tests according to updated command
swaradgat19 Aug 15, 2023
4a37e3b
modified open() with separate filename variable
swaradgat19 Aug 15, 2023
ebb00f7
changed make_geojson parameter csv from a string to a Path variable
swaradgat19 Aug 15, 2023
ee116d0
convert only new csv files to geojson instead of all
swaradgat19 Aug 16, 2023
e606e5e
handled condition if output directory doesn't exist
swaradgat19 Aug 16, 2023
636c475
changed function name to write_geojsons, fixed minor issues
swaradgat19 Aug 16, 2023
61a00df
raise CannotReadSpacing if page0 is none, fixed style issue
swaradgat19 Aug 16, 2023
0645502
order issue fixed
swaradgat19 Aug 16, 2023
800b8b2
added a try catch to handle pytorch-nightly error
swaradgat19 Aug 17, 2023
9c33ebc
styled using isort and black
swaradgat19 Aug 17, 2023
43d6257
pulled changes
swaradgat19 Sep 15, 2023
88ce406
removed redundant libraries
swaradgat19 Sep 15, 2023
54196e3
removed redundant lines in wsi.py
swaradgat19 Sep 15, 2023
e81fc34
changed folder name in ci tests for windows, ubuntu and docker
swaradgat19 Sep 19, 2023
39dc1af
shortened length of FileExistsError message
swaradgat19 Sep 19, 2023
9d521ca
Merge branch 'main' into fix/geojson_command
kaczmarj Sep 19, 2023
b1d39af
Merge branch 'SBU-BMI:main' into fix/geojson_command
swaradgat19 Oct 3, 2023
2e53003
Merge pull request #1 from swaradgat19/fix/geojson_command
swaradgat19 Oct 3, 2023
d19a359
added basic qupath integration
swaradgat19 Oct 3, 2023
dd9de0a
Merge branch 'main' of https://github.com/swaradgat19/wsinfer
swaradgat19 Oct 3, 2023
7854f95
included qupath project in gitignore
swaradgat19 Oct 3, 2023
e45bfc7
added qupath flag in command, configures QuPath path from user if not…
swaradgat19 Nov 29, 2023
fd0d98d
removed toml import
swaradgat19 Nov 30, 2023
9f53bc5
Merge branch 'SBU-BMI:main' into main
swaradgat19 Nov 30, 2023
8ae72f2
added try except to deal with recursion bug
swaradgat19 Dec 3, 2023
81eb4c7
added paquo in dependencies
swaradgat19 Dec 3, 2023
34890fb
added natsort in dependencies
swaradgat19 Dec 3, 2023
8b08823
added function which sets recursion limit according to contour length
swaradgat19 Dec 3, 2023
fa68634
specified return types
swaradgat19 Dec 3, 2023
888fb19
changed return type of temporary_recursion_limit to None
swaradgat19 Dec 3, 2023
bf98bc7
removed with statement
swaradgat19 Dec 3, 2023
7ecdc1d
formatted code
swaradgat19 Dec 3, 2023
30dbaa5
set recursion limit to maximum length of contours
swaradgat19 Dec 5, 2023
b6cace4
removed qupath file from tracking
swaradgat19 Dec 5, 2023
a4ef690
updated gitignore with qupath.py
swaradgat19 Dec 5, 2023
3ff7083
removed redundant import
swaradgat19 Dec 5, 2023
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removed toml import
swaradgat19 committed Nov 30, 2023
commit fd0d98d69eaf8394be209bc604fdd62fc585a557
1 change: 0 additions & 1 deletion wsinfer/qupath.py
Original file line number Diff line number Diff line change
@@ -5,7 +5,6 @@
from pathlib import Path
import subprocess
import os
import toml
import paquo
from natsort import natsorted #add in dependencies?