for 3.8.2

caMicroscope.yml

@@ -5,15 +5,11 @@ services:
     image: mongo:3.6.18-xenial
     container_name: ca-mongo
     restart: always
-    logging:
-      driver: none
     volumes:
       - ./db:/data/db
   idxMongo:
     image: mongo:3.6.18-xenial
     container_name: ca-idx
-    logging:
-      driver: none
     links:
       - mongo
     volumes:
@@ -23,9 +19,9 @@ services:
       - mongo
   back:
     build:
-      context: "https://github.com/camicroscope/caracal.git#v3.8.0"
+      context: "https://github.com/camicroscope/caracal.git#v3.8.2"
       args:
-        viewer: "v3.8.1"
+        viewer: "v3.8.2"
     depends_on:
       - "mongo"
     ports:

config/mongo_idx.js

@@ -4,6 +4,7 @@ db.mark.createIndex({"provenance.image.slide": 1, "provenance.analysis.execution
 db.mark.createIndex({"provenance.image.slide":1,"provenance.analysis.execution_id":1,"provenance.analysis": 1})
 db.mark.createIndex({"provenance.image.slide":1,"provenance.analysis": 1})
 db.mark.createIndex({"provenance.image.slide": 1, "provenance.analysis.execution_id": 1})
+db.mark.createIndex({"provenance.image.slide": 1, "provenance.analysis.source": 1})
 db.mark.createIndex({"provenance.image.slide": 1})
 db.slide.createIndex({'study':1, 'specimen': 1, 'name': 1})
 db.template.createIndex({'id': 1})

develop.yml

@@ -4,8 +4,6 @@ services:
   mongo:
     image: mongo:3.6.18-xenial
     container_name: ca-mongo
-    logging:
-      driver: none
     volumes:
       - ./db:/data/db
   idxMongo:

dh_caMicroscope.yml

@@ -7,13 +7,9 @@ services:
     restart: unless-stopped
     volumes:
       - ./db:/data/db
-    logging:
-      driver: none
   idxMongo:
     image: mongo:3.6.18-xenial
     container_name: ca-idx
-    logging:
-      driver: none
     links:
       - mongo
     volumes:
@@ -47,7 +43,5 @@ services:
     image: camicroscope/slideloader:latest
     container_name: ca-load
     restart: unless-stopped
-    logging:
-      driver: none
     volumes:
       - ./images/:/images/

quip-pathdb.yml

@@ -7,8 +7,6 @@ services:
     restart: unless-stopped
     volumes:
       - ./db:/data/db
-    logging:
-      driver: none
   idxMongo:
     image: mongo:3.6.18-xenial
     container_name: ca-idx
@@ -28,9 +26,9 @@ services:
       - ./images/:/data/images/
   back:
     build:
-      context: "https://github.com/camicroscope/caracal.git#v3.8.0"
+      context: "https://github.com/camicroscope/caracal.git#v3.8.2"
       args:
-        viewer: "v3.8.1"
+        viewer: "v3.8.2"
     depends_on:
       - "mongo"
     ports:
@@ -49,7 +47,7 @@ services:
     build:
       context: "https://github.com/SBU-BMI/PathDB.git#1.3.5"
       args:
-        viewer: "v3.8.1"
+        viewer: "v3.8.2"
     container_name: quip-pathdb
     restart: unless-stopped
     ports: ["443:443","80:80"]