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STYLE: remove trailing spaces and special characters
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Simon Rit committed Jan 23, 2019
1 parent f8caf87 commit 72e683d
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12 changes: 6 additions & 6 deletions COPYRIGHT.TXT
Original file line number Diff line number Diff line change
Expand Up @@ -125,7 +125,7 @@ distribute or use the Software.
rights expressly granted hereunder.

------------------------------------------------------------------------
gengetopt code has been taken from git://git.sv.gnu.org/gengetopt.git
gengetopt code has been taken from git://git.sv.gnu.org/gengetopt.git
tag rel_2_22_4


Expand Down Expand Up @@ -173,12 +173,12 @@ Some code is modified (a lot) from GIFT, the Generalized Image Fusion Toolkit

------------------------------------------------------------------------
Some code is modified from http://sourceforge.net/projects/niftyrec/:
- tt_project_ray_gpu_kernels.cu in rtkCudaForwardProjectionImageFilter.h
- tt_project_ray_gpu_kernels.cu in rtkCudaForwardProjectionImageFilter.h

NIFTYREC TOMOGRAPHY TOOLBOX
NIFTYREC TOMOGRAPHY TOOLBOX

Copyright (c) 2009-2013, University College London, United-Kingdom.
All rights reserved.
Copyright (c) 2009-2013, University College London, United-Kingdom.
All rights reserved.

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
Expand All @@ -191,7 +191,7 @@ and/or other materials provided with the distribution.

Neither the name of the University College London nor the names of its
contributors may be used to endorse or promote products derived from
this software without specific prior written permission.
this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
Expand Down
2 changes: 1 addition & 1 deletion README.rst
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
RTK: The Reconstruction ToolKit
RTK: The Reconstruction ToolKit
-------------------------------

.. image:: https://circleci.com/gh/SimonRit/RTK/tree/master.svg?style=shield
Expand Down
6 changes: 3 additions & 3 deletions applications/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ find_package(Gengetopt)
# Common revision info between applications
include(GetGitRevisionDescription)
get_git_head_revision(GIT_REFSPEC GIT_SHA1)
if(GIT_SHA1 MATCHES ".*NOTFOUND")
if(GIT_SHA1 MATCHES ".*NOTFOUND")
set(RTK_VERSION_HASH "")
else()
set(RTK_VERSION_HASH ", git hash ${GIT_SHA1}")
Expand Down Expand Up @@ -118,7 +118,7 @@ if(BUILD_TESTING)
add_test(rtkappfdkchecktest ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/rtkcheckimagequality fdk_gpu.mha)
set_tests_properties(rtkappfdkchecktest PROPERTIES DEPENDS rtkappfdkcudatest)
else()
# Only run the software version if
# Only run the software version if
if(NOT FAST_TESTS_NO_CHECKS)
add_test(rtkappfdktest ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/rtkfdk -g geo -p . -r sheppy.mha -o fdk_gpu.mha)
set_tests_properties(rtkappfdktest PROPERTIES DEPENDS rtkappprojectshepploganphantomtest)
Expand All @@ -127,5 +127,5 @@ if(BUILD_TESTING)
set_tests_properties(rtkappfdkchecktest PROPERTIES DEPENDS rtkappfdktest)
endif()
endif()

endif()
4 changes: 2 additions & 2 deletions applications/rtkadmmtotalvariation/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkadmmtotalvariation RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkadmmtotalvariation)
foreach(EXE_NAME rtkadmmtotalvariation)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

4 changes: 2 additions & 2 deletions applications/rtkadmmtotalvariation/rtkadmmtotalvariation.cxx
Original file line number Diff line number Diff line change
Expand Up @@ -38,11 +38,11 @@ int main(int argc, char * argv[])

#ifdef RTK_USE_CUDA
typedef itk::CudaImage< OutputPixelType, Dimension > OutputImageType;
typedef itk::CudaImage< itk::CovariantVector
typedef itk::CudaImage< itk::CovariantVector
< OutputPixelType, Dimension >, Dimension > GradientOutputImageType;
#else
typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
typedef itk::Image< itk::CovariantVector
typedef itk::Image< itk::CovariantVector
< OutputPixelType, Dimension >, Dimension > GradientOutputImageType;
#endif

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4 changes: 2 additions & 2 deletions applications/rtkadmmwavelets/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkadmmwavelets RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkadmmwavelets)
foreach(EXE_NAME rtkadmmwavelets)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

2 changes: 1 addition & 1 deletion applications/rtkadmmwavelets/rtkadmmwavelets.cxx
Original file line number Diff line number Diff line change
Expand Up @@ -115,7 +115,7 @@ int main(int argc, char * argv[])
// Set the inputs of the ADMM filter
admmFilter->SetInput(0, inputFilter->GetOutput() );
admmFilter->SetInput(1, projectionsReader->GetOutput() );

admmFilter->SetDisableDisplacedDetectorFilter(args_info.nodisplaced_flag);

TRY_AND_EXIT_ON_ITK_EXCEPTION( admmFilter->Update() )
Expand Down
4 changes: 2 additions & 2 deletions applications/rtkamsterdamshroud/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkamsterdamshroud RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkamsterdamshroud)
foreach(EXE_NAME rtkamsterdamshroud)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

4 changes: 2 additions & 2 deletions applications/rtkbackprojections/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkbackprojections RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkbackprojections)
foreach(EXE_NAME rtkbackprojections)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

4 changes: 2 additions & 2 deletions applications/rtkbioscangeometry/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkbioscangeometry RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkbioscangeometry)
foreach(EXE_NAME rtkbioscangeometry)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

4 changes: 2 additions & 2 deletions applications/rtkconjugategradient/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkconjugategradient RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkconjugategradient)
foreach(EXE_NAME rtkconjugategradient)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

2 changes: 1 addition & 1 deletion applications/rtkconjugategradient/rtkconjugategradient.cxx
Original file line number Diff line number Diff line change
Expand Up @@ -95,7 +95,7 @@ int main(int argc, char * argv[])
{
typedef rtk::ConstantImageSource< OutputImageType > ConstantWeightsSourceType;
ConstantWeightsSourceType::Pointer constantWeightsSource = ConstantWeightsSourceType::New();

// Set the weights to be like the projections
TRY_AND_EXIT_ON_ITK_EXCEPTION( reader->UpdateOutputInformation() )
constantWeightsSource->SetInformationFromImage(reader->GetOutput());
Expand Down
4 changes: 2 additions & 2 deletions applications/rtkdigisensgeometry/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkdigisensgeometry RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkdigisensgeometry)
foreach(EXE_NAME rtkdigisensgeometry)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

4 changes: 2 additions & 2 deletions applications/rtkdrawgeometricphantom/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkdrawgeometricphantom RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkdrawgeometricphantom)
foreach(EXE_NAME rtkdrawgeometricphantom)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

4 changes: 2 additions & 2 deletions applications/rtkdrawshepploganphantom/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkdrawshepploganphantom RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkdrawshepploganphantom)
foreach(EXE_NAME rtkdrawshepploganphantom)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

4 changes: 2 additions & 2 deletions applications/rtkdualenergyforwardmodel/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,10 +4,10 @@ target_link_libraries(rtkdualenergyforwardmodel RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkdualenergyforwardmodel)
foreach(EXE_NAME rtkdualenergyforwardmodel)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()
4 changes: 2 additions & 2 deletions applications/rtkdualenergysimplexdecomposition/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,10 +4,10 @@ target_link_libraries(rtkdualenergysimplexdecomposition RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkdualenergysimplexdecomposition)
foreach(EXE_NAME rtkdualenergysimplexdecomposition)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()
4 changes: 2 additions & 2 deletions applications/rtkelektasynergygeometry/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkelektasynergygeometry RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkelektasynergygeometry)
foreach(EXE_NAME rtkelektasynergygeometry)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

4 changes: 2 additions & 2 deletions applications/rtkextractphasesignal/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkextractphasesignal RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkextractphasesignal)
foreach(EXE_NAME rtkextractphasesignal)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

4 changes: 2 additions & 2 deletions applications/rtkextractshroudsignal/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkextractshroudsignal RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkextractshroudsignal)
foreach(EXE_NAME rtkextractshroudsignal)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

4 changes: 2 additions & 2 deletions applications/rtkfdk/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkfdk RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkfdk)
foreach(EXE_NAME rtkfdk)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

4 changes: 2 additions & 2 deletions applications/rtkfdktwodweights/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkfdktwodweights RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkfdktwodweights)
foreach(EXE_NAME rtkfdktwodweights)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

4 changes: 2 additions & 2 deletions applications/rtkfieldofview/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkfieldofview RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkfieldofview)
foreach(EXE_NAME rtkfieldofview)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

4 changes: 2 additions & 2 deletions applications/rtkforwardprojections/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkforwardprojections RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkforwardprojections)
foreach(EXE_NAME rtkforwardprojections)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

4 changes: 2 additions & 2 deletions applications/rtkfourdconjugategradient/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkfourdconjugategradient RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkfourdconjugategradient)
foreach(EXE_NAME rtkfourdconjugategradient)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

4 changes: 2 additions & 2 deletions applications/rtkfourdfdk/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkfourdfdk RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkfourdfdk)
foreach(EXE_NAME rtkfourdfdk)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

4 changes: 2 additions & 2 deletions applications/rtkfourdrooster/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ target_link_libraries(rtkfourdrooster RTK)

# Installation code
if(NOT RTK_INSTALL_NO_EXECUTABLES)
foreach(EXE_NAME rtkfourdrooster)
foreach(EXE_NAME rtkfourdrooster)
install(TARGETS ${EXE_NAME}
RUNTIME DESTINATION ${RTK_INSTALL_RUNTIME_DIR} COMPONENT Runtime
LIBRARY DESTINATION ${RTK_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
ARCHIVE DESTINATION ${RTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
endforeach()
endforeach()
endif()

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